4sbv: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:4sbv.gif|left|200px]]<br /><applet load="4sbv" size="450" color="white" frame="true" align="right" spinBox="true"
-caption="4sbv, resolution 2.8&Aring;" />
-'''THE REFINEMENT OF SOUTHERN BEAN MOSAIC VIRUS IN RECIPROCAL SPACE'''<br />
-==About this Structure==
+==The REFINEMENT OF SOUTHERN BEAN MOSAIC VIRUS IN RECIPROCAL SPACE==
-SBV is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Southern_bean_mosaic_virus Southern bean mosaic virus] with CA as [http://en.wikipedia.org/wiki/ligand ligand]. This structure superseeds the now removed PDB entries 3SBV, 2SBV and 1SBV. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=4SBV OCA].
+<StructureSection load='4sbv' size='340' side='right'caption='[[4sbv]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
-[[Category: Single protein]]
+== Structural highlights ==
+<table><tr><td colspan='2'>[[4sbv]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Southern_bean_mosaic_virus Southern bean mosaic virus]. This structure supersedes the now removed PDB entries [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3sbv 3sbv], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2sbv 2sbv] and [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1sbv 1sbv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4SBV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4SBV FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4sbv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4sbv OCA], [https://pdbe.org/4sbv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4sbv RCSB], [https://www.ebi.ac.uk/pdbsum/4sbv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4sbv ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/CAPSD_SCPMV CAPSD_SCPMV]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sb/4sbv_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=4sbv ConSurf].
+<div style="clear:both"></div>
+==See Also==
+*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Southern bean mosaic virus]]
-[[Category: Rossmann, M.G.]]
+[[Category: Rossmann MG]]
-[[Category: CA]]
-[[Category: coat protein (viral)]]
-[[Category: icosahedral virus]]
-''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 19:47:57 2007''