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==Solution structure of the C-terminal domain of Mycobacterium Tuberculosis ribosome maturation factor protein RimM== | ==Solution structure of the C-terminal domain of Mycobacterium Tuberculosis ribosome maturation factor protein RimM== | ||
<StructureSection load='7cq1' size='340' side='right'caption='[[7cq1 | <StructureSection load='7cq1' size='340' side='right'caption='[[7cq1]]' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[7cq1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/ | <table><tr><td colspan='2'>[[7cq1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis_H37Rv Mycobacterium tuberculosis H37Rv]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7CQ1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7CQ1 FirstGlance]. <br> | ||
</td></tr> | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7cq1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7cq1 OCA], [https://pdbe.org/7cq1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7cq1 RCSB], [https://www.ebi.ac.uk/pdbsum/7cq1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7cq1 ProSAT]</span></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7cq1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7cq1 OCA], [https://pdbe.org/7cq1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7cq1 RCSB], [https://www.ebi.ac.uk/pdbsum/7cq1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7cq1 ProSAT]</span></td></tr> | |||
</table> | </table> | ||
== Function == | == Function == | ||
[https://www.uniprot.org/uniprot/RIMM_MYCTU RIMM_MYCTU] An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes. | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
Multidrug-resistant tuberculosis (TB) is a serious threat to public health, calling for the development of new anti-TB drugs. Chaperon protein RimM, involved in the assembly of ribosomal protein S19 into 30S ribosomal subunit during ribosome maturation, is a potential drug target for TB treatment. The C-terminal domain (CTD) of RimM is primarily responsible for binding S19. However, both the CTD structure of RimM from Mycobacterium tuberculosis (MtbRimMCTD) and the molecular mechanisms underlying MtbRimMCTD binding S19 remain elusive. Here, we report the solution structure, dynamics features of MtbRimMCTD, and its interaction with S19. MtbRimMCTD has a rigid hydrophobic core comprised of a relatively conservative six-strand beta-barrel, tailed with a short alpha-helix and interspersed with flexible loops. Using several biophysical techniques including surface plasmon resonance (SPR) affinity assays, nuclear magnetic resonance (NMR) assays, and molecular docking, we established a structural model of the MtbRimMCTD-S19 complex and indicated that the beta4-beta5 loop and two nonconserved key residues (D105 and H129) significantly contributed to the unique pattern of MtbRimMCTD binding S19, which might be implicated in a form of orthogonality for species-dependent RimM-S19 interaction. Our study provides the structural basis for MtbRimMCTD binding S19 and is beneficial to the further exploration of MtbRimM as a potential target for the development of new anti-TB drugs. | |||
Structural Basis for the C-Terminal Domain of Mycobacterium tuberculosis Ribosome Maturation Factor RimM to Bind Ribosomal Protein S19.,Zhang H, Zhou Q, Guo C, Feng L, Wang H, Liao X, Lin D Biomolecules. 2021 Apr 18;11(4). pii: biom11040597. doi: 10.3390/biom11040597. PMID:33919647<ref>PMID:33919647</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
</div> | |||
<div class="pdbe-citations 7cq1" style="background-color:#fffaf0;"></div> | |||
== References == | |||
<references/> | |||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: | [[Category: Mycobacterium tuberculosis H37Rv]] | ||
[[Category: Lin | [[Category: Lin D]] | ||
[[Category: Zhang | [[Category: Zhang H]] | ||
Latest revision as of 14:12, 14 June 2023
Solution structure of the C-terminal domain of Mycobacterium Tuberculosis ribosome maturation factor protein RimMSolution structure of the C-terminal domain of Mycobacterium Tuberculosis ribosome maturation factor protein RimM
Structural highlights
FunctionRIMM_MYCTU An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes. Publication Abstract from PubMedMultidrug-resistant tuberculosis (TB) is a serious threat to public health, calling for the development of new anti-TB drugs. Chaperon protein RimM, involved in the assembly of ribosomal protein S19 into 30S ribosomal subunit during ribosome maturation, is a potential drug target for TB treatment. The C-terminal domain (CTD) of RimM is primarily responsible for binding S19. However, both the CTD structure of RimM from Mycobacterium tuberculosis (MtbRimMCTD) and the molecular mechanisms underlying MtbRimMCTD binding S19 remain elusive. Here, we report the solution structure, dynamics features of MtbRimMCTD, and its interaction with S19. MtbRimMCTD has a rigid hydrophobic core comprised of a relatively conservative six-strand beta-barrel, tailed with a short alpha-helix and interspersed with flexible loops. Using several biophysical techniques including surface plasmon resonance (SPR) affinity assays, nuclear magnetic resonance (NMR) assays, and molecular docking, we established a structural model of the MtbRimMCTD-S19 complex and indicated that the beta4-beta5 loop and two nonconserved key residues (D105 and H129) significantly contributed to the unique pattern of MtbRimMCTD binding S19, which might be implicated in a form of orthogonality for species-dependent RimM-S19 interaction. Our study provides the structural basis for MtbRimMCTD binding S19 and is beneficial to the further exploration of MtbRimM as a potential target for the development of new anti-TB drugs. Structural Basis for the C-Terminal Domain of Mycobacterium tuberculosis Ribosome Maturation Factor RimM to Bind Ribosomal Protein S19.,Zhang H, Zhou Q, Guo C, Feng L, Wang H, Liao X, Lin D Biomolecules. 2021 Apr 18;11(4). pii: biom11040597. doi: 10.3390/biom11040597. PMID:33919647[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
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