4v7e: Difference between revisions

No edit summary
No edit summary
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
==Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome==
==Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome==
<StructureSection load='4v7e' size='340' side='right' caption='[[4v7e]], [[Resolution|resolution]] 5.50&Aring;' scene=''>
<SX load='4v7e' size='340' side='right' viewer='molstar' caption='[[4v7e]], [[Resolution|resolution]] 5.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[4v7e]] is a 88 chain structure with sequence from [http://en.wikipedia.org/wiki/Triticum_aestivum Triticum aestivum]. This structure supersedes and combines the now removed PDB entries [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3j5z 3j5z], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3j60 3j60], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3j61 3j61] and [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3j62 3j62]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4V7E OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4V7E FirstGlance]. <br>
<table><tr><td colspan='2'>[[4v7e]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Triticum_aestivum Triticum aestivum]. This structure supersedes the now removed PDB entries [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3j5z 3j5z], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3j60 3j60], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3j61 3j61], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3j62 3j62], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3iz6 3iz6], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3iz7 3iz7], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3iz9 3iz9], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3izr 3izr] and [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3iz5 3iz5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4V7E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4V7E FirstGlance]. <br>
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4v7e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4v7e OCA], [https://pdbe.org/4v7e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4v7e RCSB], [https://www.ebi.ac.uk/pdbsum/4v7e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4v7e ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4v7e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4v7e OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4v7e RCSB], [http://www.ebi.ac.uk/pdbsum/4v7e PDBsum]</span></td></tr>
</table>
</table>
{{Large structure}}
== Function ==
[https://www.uniprot.org/uniprot/Q7X9K4_WHEAT Q7X9K4_WHEAT]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 15: Line 16:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
<div class="pdbe-citations 4v7e" style="background-color:#fffaf0;"></div>
==See Also==
*[[Ribosomal protein L26|Ribosomal protein L26]]
*[[Ribosomal protein L37|Ribosomal protein L37]]
*[[Ribosomal protein L38|Ribosomal protein L38]]
*[[Ribosomal protein L39|Ribosomal protein L39]]
*[[Ribosomal protein L41|Ribosomal protein L41]]
*[[Ribosomal protein L42|Ribosomal protein L42]]
*[[Ribosomal protein L43|Ribosomal protein L43]]
*[[Ribosomal protein L44|Ribosomal protein L44]]
*[[Ribosome 3D structures|Ribosome 3D structures]]
*[[Transfer RNA (tRNA)|Transfer RNA (tRNA)]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</SX>
[[Category: Large Structures]]
[[Category: Triticum aestivum]]
[[Category: Triticum aestivum]]
[[Category: Anger, A M]]
[[Category: Anger AM]]
[[Category: Armache, J P]]
[[Category: Armache J-P]]
[[Category: Barrio-Garcia, C]]
[[Category: Barrio-Garcia C]]
[[Category: Beatrix, B]]
[[Category: Beatrix B]]
[[Category: Becker, T]]
[[Category: Becker T]]
[[Category: Beckmann, R]]
[[Category: Beckmann R]]
[[Category: Berninghausen, O]]
[[Category: Berninghausen O]]
[[Category: Bhushan, S]]
[[Category: Bhushan S]]
[[Category: Dindar, G]]
[[Category: Dindar G]]
[[Category: Franckenberg, S]]
[[Category: Franckenberg S]]
[[Category: Habeck, M]]
[[Category: Habeck M]]
[[Category: Jarasch, A]]
[[Category: Jarasch A]]
[[Category: Jossinet, F]]
[[Category: Jossinet F]]
[[Category: Marquez, V]]
[[Category: Marquez V]]
[[Category: Mielke, T]]
[[Category: Mielke T]]
[[Category: Soeding, J]]
[[Category: Soeding J]]
[[Category: Thomm, M]]
[[Category: Thomm M]]
[[Category: Villa, E]]
[[Category: Villa E]]
[[Category: Westhof, E]]
[[Category: Westhof E]]
[[Category: Wilson, D N]]
[[Category: Wilson DN]]
[[Category: De novo modeling]]
[[Category: Eukaryotic ribosome]]
[[Category: Homology modeling]]
[[Category: Ribosomal rna]]
[[Category: Ribosome]]
[[Category: Rna expansion segment]]
[[Category: Rrna]]

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA