3op7: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-{{Seed}}
-[[Image:3op7.jpg|left|200px]]
-<!--
+==Crystal structure of a PLP-dependent aminotransferase (ZP_03625122.1) from Streptococcus suis 89-1591 at 1.70 A resolution==
-The line below this paragraph, containing "STRUCTURE_3op7", creates the "Structure Box" on the page.
+<StructureSection load='3op7' size='340' side='right'caption='[[3op7]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3op7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_suis_89/1591 Streptococcus suis 89/1591]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OP7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3OP7 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=LLP:(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC+ACID'>LLP</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene></td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3op7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3op7 OCA], [https://pdbe.org/3op7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3op7 RCSB], [https://www.ebi.ac.uk/pdbsum/3op7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3op7 ProSAT]</span></td></tr>
-{{STRUCTURE_3op7|  PDB=3op7  |  SCENE=  }}
+</table>
+== Evolutionary Conservation ==
-===Crystal structure of a PLP-dependent aminotransferase (ZP_03625122.1) from Streptococcus suis 89-1591 at 1.70 A resolution===
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
-==About this Structure==
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/op/3op7_consurf.spt"</scriptWhenChecked>
-OP7 is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OP7 OCA].
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: Bacteria]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: JCSG, Joint Center for Structural Genomics.]]
+  </jmolCheckbox>
-[[Category: Jcsg]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3op7 ConSurf].
-[[Category: Joint center for structural genomic]]
+<div style="clear:both"></div>
-[[Category: Plp-dependent transferase]]
+__TOC__
-[[Category: Protein structure initiative]]
+</StructureSection>
-[[Category: Psi]]
+[[Category: Large Structures]]
-[[Category: Structural genomic]]
+[[Category: Streptococcus suis 89/1591]]
-[[Category: Transferase]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 15 10:56:39 2010''