Art:Dodecapod: Difference between revisions

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Tailed bacteriophages and herpesviruses have a DNA "pipe" in their capsids, called a portal protein<ref name="hou2022">PMID: 35278476</ref>. The images here depict [[7sya]], a homo-dodecamer<ref name="hou2022" />. In the animation at right, each of the 12 protein chains is colored amino to carboxy spectrum (N->C Rainbow):

All images and the animation were generated with [[FirstGlance in Jmol]] ~~(version 4.0, not yet released in mid-May 2022)~~, most using color schemes available under ''Solid'' (Views tab). The two faces of the oblate structure (or tube with a flange) are designated the N-face (face with amino termini) and the C-face (face with carboxy termini).

All images show a model simplified to alpha carbons only. Except for the top row, the alpha carbons are rendered at an exaggerated diameter (6.0 Å) to give a solid appearance. All images and the animation were generated with [[FirstGlance in Jmol]], most using color schemes available under ''Solid'' (Views tab). The two faces of the oblate structure (or tube with a flange) are designated the N-face (face with amino termini) and the C-face (face with carboxy termini).

[[Image:7sya-rainbow-trace-N.png|~~200~~]]

[[Image:7sya-rainbow-trace-N.png]]

'''N[[Image:Arrow.gif]]C''' [[DRuMS#Rainbows|Rainbow]], N-face.

</td><td>

[[Image:7sya-rainbow-trace-C.png|~~200~~]]

[[Image:7sya-rainbow-trace-C.png]]

</td></tr></table>

'''N[[Image:Arrow.gif]]C''' [[DRuMS#Rainbows|Rainbow]], C-face.

</td></tr><tr><td>

[[Image:7sya-rainbow-N.png]]

'''N[[Image:Arrow.gif]]C''' [[DRuMS#Rainbows|Rainbow]], N-face.

</td><td>

[[Image:7sya-rainbow-C.png]]

'''N[[Image:Arrow.gif]]C''' [[DRuMS#Rainbows|Rainbow]], C-face.

</td></tr><tr><td>

[[Image:7sya-dist-N.png]] Distance from center, C-face

</td><td>

[[Image:7sya-seq-N.png]] 12 sequence-identical chains, C-face

</td></tr><tr><td>

[[Image:7sya-ss-N.png]] [[DRuMS#Secondary_Structure|2° structure]], N-face

</td><td>

[[Image:7sya-ss-C.png]] [[DRuMS#Secondary_Structure|2° structure]], C-face

</td></tr><tr><td>

[[Image:7sya-ch-N.png]] [[Chains]] are distinct colors, N-face

</td><td>

[[Image:7sya-ch-C.png]] [[Chains]] are distinct colors, C-face

</td></tr><tr><td>

[[Image:7sya-gs-N.png]] Distance from center, N-face

</td><td>

[[Image:7sya-gs-C.png]] Distance from center, C-face

</td></tr>

</table>

==References & Notes==

[[Category: PDB Art]]

@@ Line 4: / Line 4: @@
 Tailed bacteriophages and herpesviruses have a DNA "pipe" in their capsids, called a portal protein<ref name="hou2022">PMID: 35278476</ref>. The images here depict [[7sya]], a homo-dodecamer<ref name="hou2022" />. In the animation at right, each of the 12 protein chains is colored amino to carboxy spectrum (N->C Rainbow):
 {{Template:ColorKey_N2CRainbow}}
-All images and the animation were generated with [[FirstGlance in Jmol]] (version 4.0, not yet released in mid-May 2022), most using color schemes available under ''Solid'' (Views tab). The two faces of the oblate structure (or tube with a flange) are designated the N-face (face with amino termini) and the C-face (face with carboxy termini).
+All images show a model simplified to alpha carbons only. Except for the top row, the alpha carbons are rendered at an exaggerated diameter (6.0 &Aring;) to give a solid appearance. All images and the animation were generated with [[FirstGlance in Jmol]], most using color schemes available under ''Solid'' (Views tab). The two faces of the oblate structure (or tube with a flange) are designated the N-face (face with amino termini) and the C-face (face with carboxy termini).
-<table style="width:400px;" class="wikitable"><tr><td>
+<table class="wikitable">
-[[Image:7sya-rainbow-trace-N.png|200]]
+<tr><td>
+[[Image:7sya-rainbow-trace-N.png]]
+<br>'''<font color="blue">N</font>[[Image:Arrow.gif]]<font color="red">C</font>''' [[DRuMS#Rainbows|Rainbow]], N-face.
 </td><td>
-[[Image:7sya-rainbow-trace-C.png|200]]
+[[Image:7sya-rainbow-trace-C.png]]
-</td></tr></table>
+<br>'''<font color="blue">N</font>[[Image:Arrow.gif]]<font color="red">C</font>''' [[DRuMS#Rainbows|Rainbow]], C-face.
+</td></tr><tr><td>
+[[Image:7sya-rainbow-N.png]]
+<br>'''<font color="blue">N</font>[[Image:Arrow.gif]]<font color="red">C</font>''' [[DRuMS#Rainbows|Rainbow]], N-face.
+</td><td>
+[[Image:7sya-rainbow-C.png]]
+<br>'''<font color="blue">N</font>[[Image:Arrow.gif]]<font color="red">C</font>''' [[DRuMS#Rainbows|Rainbow]], C-face.
+</td></tr><tr><td>
+[[Image:7sya-dist-N.png]]<br>Distance from center, C-face
+</td><td>
+[[Image:7sya-seq-N.png]]<br>12 sequence-identical chains, C-face
+</td></tr><tr><td>
+[[Image:7sya-ss-N.png]]<br>[[DRuMS#Secondary_Structure|2&deg; structure]], N-face
+</td><td>
+[[Image:7sya-ss-C.png]]<br>[[DRuMS#Secondary_Structure|2&deg; structure]], C-face
+</td></tr><tr><td>
+[[Image:7sya-ch-N.png]]<br>[[Chains]] are distinct colors, N-face
+</td><td>
+[[Image:7sya-ch-C.png]]<br>[[Chains]] are distinct colors, C-face
+</td></tr><tr><td>
+[[Image:7sya-gs-N.png]]<br>Distance from center, N-face
+</td><td>
+[[Image:7sya-gs-C.png]]<br>Distance from center, C-face
+</td></tr>
+</table>
 ==References & Notes==
 <references />
+[[Category: PDB Art]]