4lf1: Difference between revisions

No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:


==Hexameric Form II RuBisCO from Rhodopseudomonas palustris, activated and complexed with 2-CABP==
==Hexameric Form II RuBisCO from Rhodopseudomonas palustris, activated and complexed with 2-CABP==
<StructureSection load='4lf1' size='340' side='right' caption='[[4lf1]], [[Resolution|resolution]] 2.38&Aring;' scene=''>
<StructureSection load='4lf1' size='340' side='right'caption='[[4lf1]], [[Resolution|resolution]] 2.38&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[4lf1]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4LF1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4LF1 FirstGlance]. <br>
<table><tr><td colspan='2'>[[4lf1]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodopseudomonas_palustris_CGA009 Rhodopseudomonas palustris CGA009]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4LF1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4LF1 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CAP:2-CARBOXYARABINITOL-1,5-DIPHOSPHATE'>CAP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CAP:2-CARBOXYARABINITOL-1,5-DIPHOSPHATE'>CAP</scene>, <scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4lf1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4lf1 OCA], [https://pdbe.org/4lf1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4lf1 RCSB], [https://www.ebi.ac.uk/pdbsum/4lf1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4lf1 ProSAT]</span></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribulose-bisphosphate_carboxylase Ribulose-bisphosphate carboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.39 4.1.1.39] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4lf1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4lf1 OCA], [http://pdbe.org/4lf1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4lf1 RCSB], [http://www.ebi.ac.uk/pdbsum/4lf1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4lf1 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/RBL2_RHOPA RBL2_RHOPA]] RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity).  
[https://www.uniprot.org/uniprot/RBL2_RHOPA RBL2_RHOPA] RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity).
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 22: Line 20:


==See Also==
==See Also==
*[[RuBisCO|RuBisCO]]
*[[RuBisCO 3D structures|RuBisCO 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Ribulose-bisphosphate carboxylase]]
[[Category: Large Structures]]
[[Category: Chan, S]]
[[Category: Rhodopseudomonas palustris CGA009]]
[[Category: Eisenberg, D]]
[[Category: Chan S]]
[[Category: Perry, L J]]
[[Category: Eisenberg D]]
[[Category: Satagopan, S]]
[[Category: Perry LJ]]
[[Category: Sawaya, M R]]
[[Category: Satagopan S]]
[[Category: Tabita, F R]]
[[Category: Sawaya MR]]
[[Category: 2-cabp]]
[[Category: Tabita FR]]
[[Category: Activated]]
[[Category: Carbamylation]]
[[Category: Carbon fixation]]
[[Category: Cbbm]]
[[Category: Enzyme activation]]
[[Category: Form ii]]
[[Category: Lyase]]
[[Category: Oxidoreductase]]
[[Category: Photosynthesis]]
[[Category: Protein]]
[[Category: Reaction intermediate analogue]]
[[Category: Transition-state analog]]

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA