4l1r: Difference between revisions

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 ==Glycoprotein B from Herpes Simplex Virus type 1, A549T Rate-of-Entry mutant, low-pH==
-<StructureSection load='4l1r' size='340' side='right' caption='[[4l1r]], [[Resolution|resolution]] 3.03&Aring;' scene=''>
+<StructureSection load='4l1r' size='340' side='right'caption='[[4l1r]], [[Resolution|resolution]] 3.03&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4l1r]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human_herpesvirus_1_strain_kos Human herpesvirus 1 strain kos]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4L1R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4L1R FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4l1r]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_alphaherpesvirus_1_strain_KOS Human alphaherpesvirus 1 strain KOS]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4L1R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4L1R FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2gum|2gum]], [[3nwf|3nwf]], [[3nwa|3nwa]], [[3nwd|3nwd]], [[3nw8|3nw8]], [[4hsi|4hsi]]</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4l1r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4l1r OCA], [https://pdbe.org/4l1r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4l1r RCSB], [https://www.ebi.ac.uk/pdbsum/4l1r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4l1r ProSAT]</span></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">gB, UL27 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10306 Human herpesvirus 1 strain KOS])</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4l1r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4l1r OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4l1r RCSB], [http://www.ebi.ac.uk/pdbsum/4l1r PDBsum]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/GB_HHV1K GB_HHV1K]] Envelope glycoprotein that forms spikes at the surface of virion envelope. Essential for the initial attachment to heparan sulfate moities of the host cell surface proteoglycans. Involved in fusion of viral and cellular membranes leading to virus entry into the host cell. Following initial binding of gD to one of its receptors, membrane fusion is mediated by the fusion machinery composed at least of gB and the heterodimer gH/gL. May also be involved in the fusion between the virion envelope and the outer nuclear membrane during virion egress. Also plays a role, together with gK, in virus-induced cell-to-cell fusion (syncytia formation).<ref>PMID:17299053</ref>
+[https://www.uniprot.org/uniprot/GB_HHV1K GB_HHV1K] Envelope glycoprotein that forms spikes at the surface of virion envelope. Essential for the initial attachment to heparan sulfate moities of the host cell surface proteoglycans. Involved in fusion of viral and cellular membranes leading to virus entry into the host cell. Following initial binding of gD to one of its receptors, membrane fusion is mediated by the fusion machinery composed at least of gB and the heterodimer gH/gL. May also be involved in the fusion between the virion envelope and the outer nuclear membrane during virion egress. Also plays a role, together with gK, in virus-induced cell-to-cell fusion (syncytia formation).<ref>PMID:17299053</ref>
 ==See Also==
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 __TOC__
 </StructureSection>
-[[Category: Human herpesvirus 1 strain kos]]
+[[Category: Human alphaherpesvirus 1 strain KOS]]
-[[Category: Heldwein, E E]]
+[[Category: Large Structures]]
-[[Category: Stampfer, S D]]
+[[Category: Heldwein EE]]
-[[Category: Coiled-coil]]
+[[Category: Stampfer SD]]
-[[Category: Entry rate]]
-[[Category: Envelope glycoprotein]]
-[[Category: Heparan sulfate]]
-[[Category: Membrane fusion]]
-[[Category: Pleckstrin homology domain]]
-[[Category: Rate of entry]]
-[[Category: Viral entry]]
-[[Category: Viral protein]]