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==The structure of CbiX, the terminal Enzyme for Biosynthesis of Siroheme in Denitrifying Bacteria==
==The structure of CbiX, the terminal Enzyme for Biosynthesis of Siroheme in Denitrifying Bacteria==
<StructureSection load='4ccs' size='340' side='right' caption='[[4ccs]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
<StructureSection load='4ccs' size='340' side='right'caption='[[4ccs]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[4ccs]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_35512 Atcc 35512]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4CCS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4CCS FirstGlance]. <br>
<table><tr><td colspan='2'>[[4ccs]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Paracoccus_pantotrophus Paracoccus pantotrophus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4CCS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4CCS FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MLT:D-MALATE'>MLT</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MLT:D-MALATE'>MLT</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ccs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ccs OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ccs RCSB], [http://www.ebi.ac.uk/pdbsum/4ccs PDBsum]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ccs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ccs OCA], [https://pdbe.org/4ccs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ccs RCSB], [https://www.ebi.ac.uk/pdbsum/4ccs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ccs ProSAT]</span></td></tr>
</table>
</table>
<div style="background-color:#fffaf0;">
== Function ==
== Publication Abstract from PubMed ==
[[https://www.uniprot.org/uniprot/A0A023GPI5_PARPN A0A023GPI5_PARPN]]
It has recently been shown that the biosynthetic route for both the d1 -haem cofactor of dissimilatory cd1 nitrite reductases and haem, via the novel alternative-haem-synthesis pathway, involves siroheme as an intermediate, which was previously thought to occur only as a cofactor in assimilatory sulphite/nitrite reductases. In many denitrifiers (which require d1 -haem), the pathway to make siroheme remained to be identified. Here we identify and characterize a sirohydrochlorin-ferrochelatase from Paracoccus pantotrophus that catalyses the last step of siroheme synthesis. It is encoded by a gene annotated as cbiX that was previously assumed to be encoding a cobaltochelatase, acting on sirohydrochlorin. Expressing this chelatase from a plasmid restored the wild-type phenotype of an Escherichia coli mutant-strain lacking sirohydrochlorin-ferrochelatase activity, showing that this chelatase can act in the in vivo siroheme synthesis. A DeltacbiX mutant in P. denitrificans was unable to respire anaerobically on nitrate, proving the role of siroheme as a precursor to another cofactor. We report the 1.9 A crystal structure of this ferrochelatase. In vivo analysis of single amino acid variants of this chelatase suggests that two histidines, His127 and His187, are essential for siroheme synthesis. This CbiX can generally be identified in alpha-proteobacteria as the terminal enzyme of siroheme biosynthesis.
 
Identification and characterization of the 'missing' terminal enzyme for siroheme biosynthesis in alpha-proteobacteria.,Bali S, Rollauer S, Roversi P, Raux-Deery E, Lea SM, Warren MJ, Ferguson SJ Mol Microbiol. 2014 Apr;92(1):153-63. doi: 10.1111/mmi.12542. Epub 2014 Mar 13. PMID:24673795<ref>PMID:24673795</ref>
 
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Atcc 35512]]
[[Category: Large Structures]]
[[Category: Bali, S]]
[[Category: Paracoccus pantotrophus]]
[[Category: Ferguson, S J]]
[[Category: Bali S]]
[[Category: Lea, S M]]
[[Category: Ferguson SJ]]
[[Category: Raux-Deery, E]]
[[Category: Lea SM]]
[[Category: Rollauer, S E]]
[[Category: Raux-Deery E]]
[[Category: Roversi, P]]
[[Category: Rollauer SE]]
[[Category: Warren, M J]]
[[Category: Roversi P]]
[[Category: Unknown function]]
[[Category: Warren MJ]]

Latest revision as of 20:39, 7 September 2022

The structure of CbiX, the terminal Enzyme for Biosynthesis of Siroheme in Denitrifying BacteriaThe structure of CbiX, the terminal Enzyme for Biosynthesis of Siroheme in Denitrifying Bacteria

Structural highlights

4ccs is a 1 chain structure with sequence from Paracoccus pantotrophus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[A0A023GPI5_PARPN]

4ccs, resolution 1.90Å

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OCA
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