3ss9: Difference between revisions
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==Crystal structure of holo D-serine dehydratase from Escherichia coli at 1.97 A resolution== | ==Crystal structure of holo D-serine dehydratase from Escherichia coli at 1.97 A resolution== | ||
<StructureSection load='3ss9' size='340' side='right' caption='[[3ss9]], [[Resolution|resolution]] 1.97Å' scene=''> | <StructureSection load='3ss9' size='340' side='right'caption='[[3ss9]], [[Resolution|resolution]] 1.97Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[3ss9]] is a 1 chain structure with sequence from [ | <table><tr><td colspan='2'>[[3ss9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SS9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3SS9 FirstGlance]. <br> | ||
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene>< | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr> | ||
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3ss7|3ss7]], [[3awo|3awo]], [[3awn|3awn]], [[3anv|3anv]], [[3rox|3rox]], [[3roz|3roz]]</td></tr> | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3ss7|3ss7]], [[3awo|3awo]], [[3awn|3awn]], [[3anv|3anv]], [[3rox|3rox]], [[3roz|3roz]]</div></td></tr> | ||
<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">b2366, dsdA, dsdA b2366JW2393, JW2363 ([ | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">b2366, dsdA, dsdA b2366JW2393, JW2363 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr> | ||
<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[ | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/D-serine_ammonia-lyase D-serine ammonia-lyase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.3.1.18 4.3.1.18] </span></td></tr> | ||
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ss9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ss9 OCA], [https://pdbe.org/3ss9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ss9 RCSB], [https://www.ebi.ac.uk/pdbsum/3ss9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ss9 ProSAT]</span></td></tr> | ||
<table> | </table> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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Crystal structure of D-serine dehydratase from Escherichia coli.,Urusova DV, Isupov MN, Antonyuk S, Kachalova GS, Oblomova G, Vagin AA, Lebedev AA, Bourenko GP, Dauter Z, Bartunik HD, Lamzin VS, Melik-Adamyan WR, Mueller TD, Schnackerz KD Biochim Biophys Acta. 2011 Nov 27. PMID:22197591<ref>PMID:22197591</ref> | Crystal structure of D-serine dehydratase from Escherichia coli.,Urusova DV, Isupov MN, Antonyuk S, Kachalova GS, Oblomova G, Vagin AA, Lebedev AA, Bourenko GP, Dauter Z, Bartunik HD, Lamzin VS, Melik-Adamyan WR, Mueller TD, Schnackerz KD Biochim Biophys Acta. 2011 Nov 27. PMID:22197591<ref>PMID:22197591</ref> | ||
From | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
<div class="pdbe-citations 3ss9" style="background-color:#fffaf0;"></div> | |||
==See Also== | |||
*[[Deaminase 3D structures|Deaminase 3D structures]] | |||
== References == | == References == | ||
<references/> | <references/> | ||
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</StructureSection> | </StructureSection> | ||
[[Category: D-serine ammonia-lyase]] | [[Category: D-serine ammonia-lyase]] | ||
[[Category: | [[Category: Ecoli]] | ||
[[Category: Antonyuk, S V | [[Category: Large Structures]] | ||
[[Category: Bartunik, H D | [[Category: Antonyuk, S V]] | ||
[[Category: Bourenkov, G P | [[Category: Bartunik, H D]] | ||
[[Category: Dauter, Z | [[Category: Bourenkov, G P]] | ||
[[Category: Isupov, M N | [[Category: Dauter, Z]] | ||
[[Category: Kachalova, G S | [[Category: Isupov, M N]] | ||
[[Category: Lebedev, A A | [[Category: Kachalova, G S]] | ||
[[Category: Melik-Adamyan, W R | [[Category: Lebedev, A A]] | ||
[[Category: Mueller, T D | [[Category: Melik-Adamyan, W R]] | ||
[[Category: Schnackerz, K D | [[Category: Mueller, T D]] | ||
[[Category: Urusova, D V | [[Category: Schnackerz, K D]] | ||
[[Category: Vagin, A A | [[Category: Urusova, D V]] | ||
[[Category: Vagin, A A]] | |||
[[Category: Alfa]] | [[Category: Alfa]] | ||
[[Category: Beta elimination]] | [[Category: Beta elimination]] | ||