User:Eric Martz/Virus capsid visualization resources: Difference between revisions

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==Virus Capsids in Proteopedia==

Articles marked [[Image:Starf-18px.png]] have 300 or more words, 4 or more green links and 4 or more literature citations. [[Image:Star-18px.png]] marks honorable mentions that are well developed but do not meet the previous arbitrary criteria.

* [[Adeno-Associated Virus]] 3D printed models

* [[Canine parvovirus|Canine parvovirus capsid]]

* [[Cowpea Chlorotic Mottle Virus]] capsid

* Ebola: [[Journal:Acta_Cryst_F:S2053230X19004424|Structure of the Ebola virus nucleoprotein - RNA complex]]

* [[Image:Starf-18px.png]] [[Hiv-1 gag|Gag of HIV-1]]

* [[Gag polyprotein]], part of the capsid of HIV and other retroviruses.

* HIV: [[Human Immunodeficiency Virus]] has a list of links to more than 20 related articles in Proteopedia.

* [[Image:Starf-18px.png]] Human papilloma virus: [[Major capsid protein L1|HPV major capsid protein L1]], basis for the Gardasil 9 vaccine.

* [[Human rhinovirus|Rhinovirus, human]]

* [[Ann Taylor/sandbox Norovirus oligosaccaride binding|Norovirus oligosaccaride binding]]

* [[Image:Star-18px.png]] [[Journal:PLoS_ONE:1|Polio virus capsid]]

* [[SV40 Capsid Simplified]]

* [[SV40 Capsid Simplified]] overlays the capsid with its geometric icosahedron.

* [[Tobacco Mosaic Virus]]

* [[Image:Star-18px.png]] [[Tobacco Mosaic Virus]]

* [[Viral capsids]] ***

* [[Virus coat protein]]

* [[Art:Zika virus|Zika virus -- Art]]

* [[Hugo Heringer de Almeida/5YGH|Zika virus capsid protein]]

*** Needs further examination.

==Lists of Links==

* HIV: [[Human Immunodeficiency Virus]] has a list of links to more than 20 related articles in Proteopedia.

* [[Virus coat proteins 3D structures]]

==External Virus Capsid Resources==

* [https://pdb101.rcsb.org/ Molecule of the Month] at the RCSB PDB offers:

** [https://pdb101.rcsb.org/learn/flyers-posters-and-calendars/poster/200-icosahedral-viruses 200 Icosahedral Viruses from the PDB] offers a poster with virus capsids arranged by size, and colored by the number of protein chains/capsid (60 to 8,280). The poster is available with or without [[PDB codes]].

** [https://pdb101.rcsb.org/motm/132 Adenovirus Capsid] has long fibers extending from its vertices.

** [https://pdb101.rcsb.org/motm/163 HIV Capsid].

** [https://pdb101.rcsb.org/motm/221 HPV: Human Papillomavirus and Vaccines].

** [https://pdb101.rcsb.org/learn/paper-models Paper models of viruses] can be constructed using instructions provided.

** [https://pdb101.rcsb.org/motm/200 Quasisymmetry in Icosahedral Viruses] explains how icosahedral capsids of different sizes assemble from copies of a single subunit protein chain, and explains triangulation numbers with examples.

* [https://viperdb.scripps.edu/ VIPERdb / VIrus Particle ExploreR database] includes:

** Static images of virus capsids organized by taxa.

* The [https://viralzone.expasy.org/885 Virion Section] of the [https://viralzone.expasy.org/ ViralZone] offers schematics for triangulation numbers with links to virus taxa, UniProt, etc. See also [https://viralzone.expasy.org/750 Browse by Virion].

==Notes==

* [[User:Jaime Prilusky/Test/4v99]] shows a capsid available only in mmCIF format.

* [[User:Jaime Prilusky/Test/6ncl]] Giant virus, mmCIF only.

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 ==Virus Capsids in Proteopedia==
 Articles marked [[Image:Starf-18px.png]] have 300 or more words, 4 or more green links and 4 or more literature citations. [[Image:Star-18px.png]] marks honorable mentions that are well developed but do not meet the previous arbitrary criteria.
+* [[Adeno-Associated Virus]] 3D printed models
 * [[Canine parvovirus|Canine parvovirus capsid]]
+* [[Cowpea Chlorotic Mottle Virus]] capsid
 * Ebola: [[Journal:Acta_Cryst_F:S2053230X19004424|Structure of the Ebola virus nucleoprotein - RNA complex]]
 * [[Image:Starf-18px.png]] [[Hiv-1 gag|Gag of HIV-1]]
 * [[Gag polyprotein]], part of the capsid of HIV and other retroviruses.
-* HIV: [[Human Immunodeficiency Virus]] has a list of links to more than 20 related articles in Proteopedia.
 * [[Image:Starf-18px.png]] Human papilloma virus: [[Major capsid protein L1|HPV major capsid protein L1]], basis for the Gardasil 9 vaccine.
 * [[Human rhinovirus|Rhinovirus, human]]
+* [[Ann Taylor/sandbox Norovirus oligosaccaride binding|Norovirus oligosaccaride binding]]
 * [[Image:Star-18px.png]] [[Journal:PLoS_ONE:1|Polio virus capsid]]
-* [[SV40 Capsid Simplified]]
+* [[SV40 Capsid Simplified]] overlays the capsid with its geometric icosahedron.
-* [[Tobacco Mosaic Virus]]
+* [[Image:Star-18px.png]] [[Tobacco Mosaic Virus]]
+* [[Viral capsids]] ***
 * [[Virus coat protein]]
+* [[Art:Zika virus|Zika virus -- Art]]
 * [[Hugo Heringer de Almeida/5YGH|Zika virus capsid protein]]
+ *** Needs further examination.
+==Lists of Links==
+* HIV: [[Human Immunodeficiency Virus]] has a list of links to more than 20 related articles in Proteopedia.
+* [[Virus coat proteins 3D structures]]
+==External Virus Capsid Resources==
+* [https://pdb101.rcsb.org/ Molecule of the Month] at the RCSB PDB offers:
+** [https://pdb101.rcsb.org/learn/flyers-posters-and-calendars/poster/200-icosahedral-viruses 200 Icosahedral Viruses from the PDB] offers a poster with virus capsids arranged by size, and colored by the number of protein chains/capsid (60 to 8,280). The poster is available with or without [[PDB codes]].
+** [https://pdb101.rcsb.org/motm/132 Adenovirus Capsid] has long fibers extending from its vertices.
+** [https://pdb101.rcsb.org/motm/163 HIV Capsid].
+** [https://pdb101.rcsb.org/motm/221 HPV: Human Papillomavirus and Vaccines].
+** [https://pdb101.rcsb.org/learn/paper-models Paper models of viruses] can be constructed using instructions provided.
+** [https://pdb101.rcsb.org/motm/200 Quasisymmetry in Icosahedral Viruses] explains how icosahedral capsids of different sizes assemble from copies of a single subunit protein chain, and explains triangulation numbers with examples.
+* [https://viperdb.scripps.edu/ VIPERdb / VIrus Particle ExploreR database] includes:
+** Static images of virus capsids organized by taxa.
+* The [https://viralzone.expasy.org/885 Virion Section] of the [https://viralzone.expasy.org/ ViralZone] offers schematics for triangulation numbers with links to virus taxa, UniProt, etc. See also [https://viralzone.expasy.org/750 Browse by Virion].
 ==Notes==
 * [[User:Jaime Prilusky/Test/4v99]] shows a capsid available only in mmCIF format.
+* [[User:Jaime Prilusky/Test/6ncl]] Giant virus, mmCIF only.