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==Virus Capsids in Proteopedia== | ==Virus Capsids in Proteopedia== | ||
Articles marked [[Image:Starf-18px.png]] have 300 or more words, 4 or more green links and 4 or more literature citations. | Articles marked [[Image:Starf-18px.png]] have 300 or more words, 4 or more green links and 4 or more literature citations. [[Image:Star-18px.png]] marks honorable mentions that are well developed but do not meet the previous arbitrary criteria. | ||
* [[Adeno-Associated Virus]] 3D printed models | |||
* [[Canine parvovirus|Canine parvovirus capsid]] | * [[Canine parvovirus|Canine parvovirus capsid]] | ||
* [[Cowpea Chlorotic Mottle Virus]] capsid | |||
* Ebola: [[Journal:Acta_Cryst_F:S2053230X19004424|Structure of the Ebola virus nucleoprotein - RNA complex]] | * Ebola: [[Journal:Acta_Cryst_F:S2053230X19004424|Structure of the Ebola virus nucleoprotein - RNA complex]] | ||
* [[Image:Starf-18px.png]] [[Hiv-1 gag|Gag of HIV-1]] | * [[Image:Starf-18px.png]] [[Hiv-1 gag|Gag of HIV-1]] | ||
* [[Gag polyprotein]], part of the capsid of HIV and other retroviruses. | * [[Gag polyprotein]], part of the capsid of HIV and other retroviruses. | ||
* [[Image:Starf-18px.png]] Human papilloma virus: [[Major capsid protein L1|HPV major capsid protein L1]], basis for the Gardasil 9 vaccine. | * [[Image:Starf-18px.png]] Human papilloma virus: [[Major capsid protein L1|HPV major capsid protein L1]], basis for the Gardasil 9 vaccine. | ||
* [[Human rhinovirus|Rhinovirus, human]] | * [[Human rhinovirus|Rhinovirus, human]] | ||
* [[SV40 Capsid Simplified]] | * [[Ann Taylor/sandbox Norovirus oligosaccaride binding|Norovirus oligosaccaride binding]] | ||
* [[Tobacco Mosaic Virus]] | * [[Image:Star-18px.png]] [[Journal:PLoS_ONE:1|Polio virus capsid]] | ||
* [[SV40 Capsid Simplified]] overlays the capsid with its geometric icosahedron. | |||
* [[Image:Star-18px.png]] [[Tobacco Mosaic Virus]] | |||
* [[Viral capsids]] *** | |||
* [[Virus coat protein]] | * [[Virus coat protein]] | ||
* [[Art:Zika virus|Zika virus -- Art]] | |||
* [[Hugo Heringer de Almeida/5YGH|Zika virus capsid protein]] | * [[Hugo Heringer de Almeida/5YGH|Zika virus capsid protein]] | ||
*** Needs further examination. | |||
==Lists of Links== | |||
* HIV: [[Human Immunodeficiency Virus]] has a list of links to more than 20 related articles in Proteopedia. | |||
* [[Virus coat proteins 3D structures]] | |||
==External Virus Capsid Resources== | |||
* [https://pdb101.rcsb.org/ Molecule of the Month] at the RCSB PDB offers: | |||
** [https://pdb101.rcsb.org/learn/flyers-posters-and-calendars/poster/200-icosahedral-viruses 200 Icosahedral Viruses from the PDB] offers a poster with virus capsids arranged by size, and colored by the number of protein chains/capsid (60 to 8,280). The poster is available with or without [[PDB codes]]. | |||
** [https://pdb101.rcsb.org/motm/132 Adenovirus Capsid] has long fibers extending from its vertices. | |||
** [https://pdb101.rcsb.org/motm/163 HIV Capsid]. | |||
** [https://pdb101.rcsb.org/motm/221 HPV: Human Papillomavirus and Vaccines]. | |||
** [https://pdb101.rcsb.org/learn/paper-models Paper models of viruses] can be constructed using instructions provided. | |||
** [https://pdb101.rcsb.org/motm/200 Quasisymmetry in Icosahedral Viruses] explains how icosahedral capsids of different sizes assemble from copies of a single subunit protein chain, and explains triangulation numbers with examples. | |||
* [https://viperdb.scripps.edu/ VIPERdb / VIrus Particle ExploreR database] includes: | |||
** Static images of virus capsids organized by taxa. | |||
* The [https://viralzone.expasy.org/885 Virion Section] of the [https://viralzone.expasy.org/ ViralZone] offers schematics for triangulation numbers with links to virus taxa, UniProt, etc. See also [https://viralzone.expasy.org/750 Browse by Virion]. | |||
==Notes== | |||
* [[User:Jaime Prilusky/Test/4v99]] shows a capsid available only in mmCIF format. | |||
* [[User:Jaime Prilusky/Test/6ncl]] Giant virus, mmCIF only. | |||