3ir4: Difference between revisions

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OCA

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-[[Image:3ir4.png|left|200px]]
-<!--
+==1.2 Angstrom Crystal Structure of the Glutaredoxin 2 (grxB) from Salmonella typhimurium in complex with Glutathione==
-The line below this paragraph, containing "STRUCTURE_3ir4", creates the "Structure Box" on the page.
+<StructureSection load='3ir4' size='340' side='right'caption='[[3ir4]], [[Resolution|resolution]] 1.20&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3ir4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Salty Salty]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IR4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IR4 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GSH:GLUTATHIONE'>GSH</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
--->
+<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-{{STRUCTURE_3ir4|  PDB=3ir4  |  SCENE=  }}
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">grxB, STM1165 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=99287 SALTY])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ir4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ir4 OCA], [https://pdbe.org/3ir4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ir4 RCSB], [https://www.ebi.ac.uk/pdbsum/3ir4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ir4 ProSAT], [https://www.topsan.org/Proteins/CSGID/3ir4 TOPSAN]</span></td></tr>
-===1.2 Angstrom Crystal Structure of the Glutaredoxin 2 (grxB) from Salmonella typhimurium in complex with Glutathione===
+</table>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
-==About this Structure==
+Check<jmol>
-[[3ir4]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IR4 OCA].
+  <jmolCheckbox>
-[[Category: Salmonella enterica subsp. enterica serovar typhimurium]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ir/3ir4_consurf.spt"</scriptWhenChecked>
-[[Category: Anderson, W F.]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: CSGID, Center for Structural Genomics of Infectious Diseases.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Dauter, Z.]]
+  </jmolCheckbox>
-[[Category: Halavaty, A.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ir4 ConSurf].
-[[Category: Minasov, G.]]
+<div style="clear:both"></div>
-[[Category: Onopriyenko, O.]]
+__TOC__
-[[Category: Peterson, S N.]]
+</StructureSection>
-[[Category: Skarina, T.]]
+[[Category: Large Structures]]
-[[Category: Wawrzak, Z.]]
+[[Category: Salty]]
-[[Category: Center for structural genomics of infectious disease]]
+[[Category: Anderson, W F]]
+[[Category: Structural genomic]]
+[[Category: Dauter, Z]]
+[[Category: Halavaty, A]]
+[[Category: Minasov, G]]
+[[Category: Onopriyenko, O]]
+[[Category: Peterson, S N]]
+[[Category: Skarina, T]]
+[[Category: Wawrzak, Z]]
 [[Category: Csgid]]
 [[Category: Glutaredoxin 2]]
@@ Line 30: / Line 37: @@
 [[Category: Idp00895]]
 [[Category: Oxidoreductase]]
-[[Category: Structural genomic]]