2v4x: Difference between revisions
New page: '''Unreleased structure''' The entry 2v4x is ON HOLD until Paper Publication Authors: Mortuza, G.B., Goldstone, D.C., Pashley, C., Haire, L.F., Palmarini, M., Taylor, W.R., Stoye, J.P.,... |
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==Crystal Structure of Jaagsiekte Sheep Retrovirus Capsid N-terminal domain== | |||
<StructureSection load='2v4x' size='340' side='right'caption='[[2v4x]], [[Resolution|resolution]] 1.50Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[2v4x]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Endogenous_jaagziekte_retrovirus Endogenous jaagziekte retrovirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V4X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2V4X FirstGlance]. <br> | |||
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2v4x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v4x OCA], [https://pdbe.org/2v4x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2v4x RCSB], [https://www.ebi.ac.uk/pdbsum/2v4x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2v4x ProSAT]</span></td></tr> | |||
</table> | |||
== Evolutionary Conservation == | |||
[[Image:Consurf_key_small.gif|200px|right]] | |||
Check<jmol> | |||
<jmolCheckbox> | |||
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v4/2v4x_consurf.spt"</scriptWhenChecked> | |||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |||
<text>to colour the structure by Evolutionary Conservation</text> | |||
</jmolCheckbox> | |||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2v4x ConSurf]. | |||
<div style="clear:both"></div> | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
Jaagsiekte sheep retrovirus is a betaretrovirus and the causative agent of pulmonary adenocarcinoma, a transmissible lung tumour of sheep. Here we report the crystal structure of the capsid amino-terminal domain and examine the self-association properties of Jaagsiekte sheep retrovirus capsid. We find that the structure is remarkably similar to the amino-terminal domain of the alpharetrovirus, avian leukosis virus, revealing a previously undetected evolutionary similarity. Examination of capsid self-association suggests a mode of assembly not driven by the strong capsid carboxy-terminal domain interactions that characterise capsid assembly in the lentiviruses. Based on these data, we propose this structure provides a model for the capsid of betaretroviruses including the HML-2 family of endogenous human betaretroviruses. | |||
Structure of the Capsid Amino-Terminal Domain from the Betaretrovirus, Jaagsiekte Sheep Retrovirus.,Mortuza GB, Goldstone DC, Pashley C, Haire LF, Palmarini M, Taylor WR, Stoye JP, Taylor IA J Mol Biol. 2008 Nov 5. PMID:19007792<ref>PMID:19007792</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
</div> | |||
<div class="pdbe-citations 2v4x" style="background-color:#fffaf0;"></div> | |||
==See Also== | |||
*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]] | |||
== References == | |||
<references/> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Endogenous jaagziekte retrovirus]] | |||
[[Category: Large Structures]] | |||
[[Category: Goldstone, D C]] | |||
[[Category: Haire, L F]] | |||
[[Category: Mortuza, G B]] | |||
[[Category: Palmarini, M]] | |||
[[Category: Pashley, C]] | |||
[[Category: Stoye, J P]] | |||
[[Category: Taylor, I A]] | |||
[[Category: Taylor, W R]] | |||
[[Category: Capsid]] | |||
[[Category: Capsid protein]] | |||
[[Category: Metal-binding]] | |||
[[Category: Retrovirus]] | |||
[[Category: Structural protein]] | |||
[[Category: Viral matrix protein]] | |||
[[Category: Viral nucleoprotein]] | |||
[[Category: Viral protein]] | |||
[[Category: Virion]] | |||
[[Category: Zinc-finger]] | |||