3grh: Difference between revisions

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{{Seed}}
[[Image:3grh.png|left|200px]]


<!--
==Crystal structure of escherichia coli ybhc==
The line below this paragraph, containing "STRUCTURE_3grh", creates the "Structure Box" on the page.
<StructureSection load='3grh' size='340' side='right'caption='[[3grh]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3grh]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GRH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GRH FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">b0772, JW0755, ybhC ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3grh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3grh OCA], [https://pdbe.org/3grh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3grh RCSB], [https://www.ebi.ac.uk/pdbsum/3grh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3grh ProSAT]</span></td></tr>
{{STRUCTURE_3grh|  PDB=3grh  |  SCENE=  }}
</table>
 
== Function ==
===Crystal structure of escherichia coli ybhc===
[[https://www.uniprot.org/uniprot/YBHC_ECOLI YBHC_ECOLI]] Putative thioesterase. Does not bind pectin, and has no pectinesterase activity.<ref>PMID:15808744</ref> <ref>PMID:19452549</ref>
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
==About this Structure==
Check<jmol>
3GRH is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_k-12 Escherichia coli k-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GRH OCA].  
  <jmolCheckbox>
 
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gr/3grh_consurf.spt"</scriptWhenChecked>
==Reference==
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<ref group="xtra">PMID:19452549</ref><references group="xtra"/>
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Escherichia coli k-12]]
  </jmolCheckbox>
[[Category: Brumer, H.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3grh ConSurf].
[[Category: Divne, C.]]
<div style="clear:both"></div>
[[Category: Eklof, J M.]]
== References ==
[[Category: Tan, T C.]]
<references/>
__TOC__
</StructureSection>
[[Category: Ecoli]]
[[Category: Large Structures]]
[[Category: Brumer, H]]
[[Category: Divne, C]]
[[Category: Eklof, J M]]
[[Category: Tan, T C]]
[[Category: Aspartyl esterase]]
[[Category: Aspartyl esterase]]
[[Category: Beta-helix]]
[[Category: Beta-helix]]
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[[Category: Periplasmic]]
[[Category: Periplasmic]]
[[Category: Ybhc]]
[[Category: Ybhc]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Nov  3 11:20:15 2010''

Latest revision as of 10:53, 16 March 2022

Crystal structure of escherichia coli ybhcCrystal structure of escherichia coli ybhc

Structural highlights

3grh is a 1 chain structure with sequence from Ecoli. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Gene:b0772, JW0755, ybhC (ECOLI)
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[YBHC_ECOLI] Putative thioesterase. Does not bind pectin, and has no pectinesterase activity.[1] [2]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

References

  1. ↑ Kuznetsova E, Proudfoot M, Sanders SA, Reinking J, Savchenko A, Arrowsmith CH, Edwards AM, Yakunin AF. Enzyme genomics: Application of general enzymatic screens to discover new enzymes. FEMS Microbiol Rev. 2005 Apr;29(2):263-79. PMID:15808744 doi:S0168-6445(05)00004-5
  2. ↑ Eklof JM, Tan TC, Divne C, Brumer H. The crystal structure of the outer membrane lipoprotein YbhC from Escherichia coli sheds new light on the phylogeny of carbohydrate esterase family 8. Proteins. 2009 Sep;76(4):1029-36. PMID:19452549 doi:10.1002/prot.22453

3grh, resolution 1.70Å

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