Sandbox1rpu: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Wayne Decatur

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-This works:
+configuration&isosurfaces&dots for p19 tour problematic until did one step at a time using console
+<Structure load='1d66' size='350' frame='true' align='right' caption='Insert caption here' scene='Insert optional scene name here' />
+==This works:==
 {{Structure
-|PDB= 1rpu |SIZE=400|SCENE=User:Wayne_Decatur/Plant_Viral_Protein_p19_Suppression_of_RNA_Silencing/Molecular_caliper_surface/2|CAPTION= okay but I need wireframes for some other ones
+|PDB= 1rpu |SIZE=400|SCENE=Sandbox1rpu/Molecular_caliper/1|CAPTION= okay but I need wireframes for some other views
 |SITE=
 |LIGAND=
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 }}
-But if you run the command "configuration 1" to try and be able to add wireframe for nucleic you get stuck with these bonds, I cannot seem to get rid of:
+==this works now too and I made it using view above and configuration 1 and rebuilding one line at a time in jmol console:==
 {{Structure
-|PDB= 1rpu |SIZE=400|SCENE=User:Wayne_Decatur/Plant_Viral_Protein_p19_Suppression_of_RNA_Silencing/View1/2|CAPTION= 1rpu, resolution 2.50&Aring; (<scene name='User:Wayne_Decatur/Plant_Viral_Protein_p19_Suppression_of_RNA_Silencing/View1/2'>initial scene</scene>)
+|PDB= 1rpu |SIZE=400|SCENE=Sandbox1rpu/Molecular_caliper_prefected/2|CAPTION= 1rpu, resolution 2.50&Aring; (<scene name='Sandbox1rpu/Molecular_caliper_prefected/2'>initial scene</scene>)
 |SITE=
 |LIGAND=
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 |RESOURCES=<span class='plainlinks'><!--[http://www-unix.oit.umass.edu/~wdecatur/p19tutorial/ Explorable Tour], Eric Martz felt no one would look here-->[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rpu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rpu OCA], [http://www.ebi.ac.uk/pdbsum/1rpu PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1rpu RCSB]</span>
 }}
+WEIRD thing with configuration I saw on October 24th 2009. When I enter 'configuration 1;' or 'configuration 2;' console in Proteopedia SAT, then it added weird lines from bases and among protein that were faint but I couldn't get rid of. It wouldn't happen in the newest version of FirstGlance linked to 1rpu page but then later it even wouldn't happen in SAT when I initiated new browser windows and JAVA runs. At first I thought it was leaving off the semi-colon but then it seemed to work with the semi-colon everywhere too. So another weird thing like when you need to scroll side of browser window to get a stuck animation going.