2nbt: Difference between revisions

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-[[Image:2nbt.png|left|200px]]
-<!--
+==NEURONAL BUNGAROTOXIN, NMR, 10 STRUCTURES==
-The line below this paragraph, containing "STRUCTURE_2nbt", creates the "Structure Box" on the page.
+<StructureSection load='2nbt' size='340' side='right'caption='[[2nbt]], [[NMR_Ensembles_of_Models | 10 NMR models]]' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2nbt]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bungarus_multicinctus Bungarus multicinctus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1nbt 1nbt]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NBT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NBT FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2nbt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nbt OCA], [https://pdbe.org/2nbt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2nbt RCSB], [https://www.ebi.ac.uk/pdbsum/2nbt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2nbt ProSAT]</span></td></tr>
--->
+</table>
-{{STRUCTURE_2nbt|  PDB=2nbt  |  SCENE=  }}
+== Function ==
+[[https://www.uniprot.org/uniprot/NXL1_BUNMU NXL1_BUNMU]] Neurotoxin. Binds and inhibits nicotinic acetylcholine receptors. Compared to alpha-neurotoxins, kappa-neurotoxins bind more strongly to neuronal receptors, and less strongly to muscle receptors.<ref>PMID:3986193</ref>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nb/2nbt_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2nbt ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Neuronal bungarotoxin has previously been shown, using two-dimensional 1H NMR spectroscopy, to have a triple-stranded antiparallel beta-sheet structure which dimerizes in solution [Oswald, R.E., Sutcliffe, M.J., Bamberger, M., Loring, R.H., Braswell, E., &amp; Dobson, C.M. (1991) Biochemistry 30, 4901-4909]. In this paper, structural calculations are described which use the 582 experimentally measured NOE restraints in conjunction with 27 phi-angle restraints from J-value measurements. The positions of the N-terminal region and C-terminal region were poorly defined in the calculated structures with respect to the remainder of the structure. The region of the structure containing the triple-stranded beta-sheet was, however, well defined and similar to that found in the structure of homologous alpha-bungarotoxin (45% amino acid identity). The experimental restraints did not result in a well-defined dimer interface region because of the small number of NOEs which could be identified in this region. An approach was therefore adopted which produced model structures based to varying degrees on the alpha-bungarotoxin structure. Fourteen different structures were generated in this manner and subsequently used as starting points for refinement using dynamical simulated annealing followed by restrained molecular dynamics. This approach, which combines NMR data and homologous model building, has enabled a family of structures to be proposed for the dimeric molecule. In particular, Phe49 has been identified as possibly playing an important role in dimer formation, this residue in one chain interacting with the corresponding residue in the adjacent chain.
-===NEURONAL BUNGAROTOXIN, NMR, 10 STRUCTURES===
+Solution structure of neuronal bungarotoxin determined by two-dimensional NMR spectroscopy: calculation of tertiary structure using systematic homologous model building, dynamical simulated annealing, and restrained molecular dynamics.,Sutcliffe MJ, Dobson CM, Oswald RE Biochemistry. 1992 Mar 24;31(11):2962-70. PMID:1550821<ref>PMID:1550821</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-<!--
+</div>
-The line below this paragraph, {{ABSTRACT_PUBMED_1550821}}, adds the Publication Abstract to the page
+<div class="pdbe-citations 2nbt" style="background-color:#fffaf0;"></div>
-(as it appears on PubMed at http://www.pubmed.gov), where 1550821 is the PubMed ID number.
--->
-{{ABSTRACT_PUBMED_1550821}}
-==About this Structure==
-[[2nbt]] is a 2 chain structure of [[Bungarotoxin]] with sequence from [http://en.wikipedia.org/wiki/Bungarus_multicinctus Bungarus multicinctus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1nbt 1nbt]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NBT OCA].
 ==See Also==
-*[[Bungarotoxin]]
+*[[Bungarotoxin 3D structures|Bungarotoxin 3D structures]]
+== References ==
-==Reference==
+<references/>
-<ref group="xtra">PMID:1550821</ref><references group="xtra"/>
+__TOC__
+</StructureSection>
 [[Category: Bungarus multicinctus]]
-[[Category: Bamberger, M.]]
+[[Category: Large Structures]]
-[[Category: Braswell, E.]]
+[[Category: Bamberger, M]]
-[[Category: Dobson, C M.]]
+[[Category: Braswell, E]]
-[[Category: Loring, R H.]]
+[[Category: Dobson, C M]]
-[[Category: Oswald, R E.]]
+[[Category: Loring, R H]]
-[[Category: Sutcliffe, M J.]]
+[[Category: Oswald, R E]]
+[[Category: Sutcliffe, M J]]
 [[Category: Neurotoxin]]
 [[Category: Toxin]]
 [[Category: Venom]]