3eer: Difference between revisions

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 ==High resolution structure of putative organic hydroperoxide resistance protein from Vibrio cholerae O1 biovar eltor str. N16961==
-<StructureSection load='3eer' size='340' side='right' caption='[[3eer]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
+<StructureSection load='3eer' size='340' side='right'caption='[[3eer]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3eer]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_cholerae_o1_biovar_el_tor Vibrio cholerae o1 biovar el tor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EER OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3EER FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3eer]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibch Vibch]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EER OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EER FirstGlance]. <br>
-</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-<tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VC_A1006 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=686 Vibrio cholerae O1 biovar El Tor])</td></tr>
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VC_A1006 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243277 VIBCH])</td></tr>
-<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3eer FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3eer OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3eer RCSB], [http://www.ebi.ac.uk/pdbsum/3eer PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3eer FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3eer OCA], [https://pdbe.org/3eer PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3eer RCSB], [https://www.ebi.ac.uk/pdbsum/3eer PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3eer ProSAT]</span></td></tr>
-<table>
+</table>
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ee/3eer_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ee/3eer_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3eer ConSurf].
 <div style="clear:both"></div>
@@ Line 23: / Line 24: @@
 __TOC__
 </StructureSection>
-[[Category: Vibrio cholerae o1 biovar el tor]]
+[[Category: Large Structures]]
-[[Category: Anderson, W F.]]
+[[Category: Vibch]]
-[[Category: CSGID, Center for Structural Genomics of Infectious Diseases.]]
+[[Category: Anderson, W F]]
-[[Category: Joachimiak, A.]]
+[[Category: Structural genomic]]
-[[Category: Kwon, K.]]
+[[Category: Joachimiak, A]]
-[[Category: Maltseva, N.]]
+[[Category: Kwon, K]]
-[[Category: Nocek, B.]]
+[[Category: Maltseva, N]]
-[[Category: Center for structural genomics of infectious disease]]
+[[Category: Nocek, B]]
 [[Category: Csgid]]
 [[Category: Organic hydroperoxide resistance protein]]
 [[Category: Orhc]]
 [[Category: Oxidoreductase]]
-[[Category: Structural genomic]]