3dc7: Difference between revisions

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[[Image:3dc7.png|left|200px]]


<!--
==Crystal structure of the protein Q88SR8 from Lactobacillus plantarum. Northeast Structural Genomics consortium target LpR109.==
The line below this paragraph, containing "STRUCTURE_3dc7", creates the "Structure Box" on the page.
<StructureSection load='3dc7' size='340' side='right'caption='[[3dc7]], [[Resolution|resolution]] 2.12&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3dc7]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Lactobacillus_plantarum Lactobacillus plantarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DC7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DC7 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-->
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
{{STRUCTURE_3dc7|  PDB=3dc7  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dc7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dc7 OCA], [https://pdbe.org/3dc7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dc7 RCSB], [https://www.ebi.ac.uk/pdbsum/3dc7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dc7 ProSAT], [https://www.topsan.org/Proteins/NESGC/3dc7 TOPSAN]</span></td></tr>
 
</table>
===Crystal structure of the protein Q88SR8 from Lactobacillus plantarum. Northeast Structural Genomics consortium target LpR109.===
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
==About this Structure==
  <jmolCheckbox>
3DC7 is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Lactobacillus_plantarum Lactobacillus plantarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DC7 OCA].  
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dc/3dc7_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dc7 ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Lactobacillus plantarum]]
[[Category: Lactobacillus plantarum]]
[[Category: Abashidze, M.]]
[[Category: Large Structures]]
[[Category: Acton, T B.]]
[[Category: Abashidze, M]]
[[Category: Baran, M C.]]
[[Category: Acton, T B]]
[[Category: Ciccosanti, C.]]
[[Category: Baran, M C]]
[[Category: Hunt, J F.]]
[[Category: Ciccosanti, C]]
[[Category: Kuzin, A P.]]
[[Category: Hunt, J F]]
[[Category: Mao, L.]]
[[Category: Kuzin, A P]]
[[Category: Montelione, G T.]]
[[Category: Mao, L]]
[[Category: NESG, Northeast Structural Genomics Consortium.]]
[[Category: Montelione, G T]]
[[Category: Nair, R.]]
[[Category: Structural genomic]]
[[Category: Rost, B.]]
[[Category: Nair, R]]
[[Category: Seetharaman, J.]]
[[Category: Rost, B]]
[[Category: Tong, L.]]
[[Category: Seetharaman, J]]
[[Category: Vorobiev, S M.]]
[[Category: Tong, L]]
[[Category: Xiao, R.]]
[[Category: Vorobiev, S M]]
[[Category: Zhao, L.]]
[[Category: Xiao, R]]
[[Category: Zhao, L]]
[[Category: Nesg lpr109 x-ray lp_3323]]
[[Category: Nesg lpr109 x-ray lp_3323]]
[[Category: Northeast structural genomics consortium]]
[[Category: PSI, Protein structure initiative]]
[[Category: Protein structure initiative]]
[[Category: Psi-2]]
[[Category: Structural genomic]]
[[Category: Unknown function]]
[[Category: Unknown function]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 12:13:39 2008''

Latest revision as of 11:00, 2 February 2022

Crystal structure of the protein Q88SR8 from Lactobacillus plantarum. Northeast Structural Genomics consortium target LpR109.Crystal structure of the protein Q88SR8 from Lactobacillus plantarum. Northeast Structural Genomics consortium target LpR109.

Structural highlights

3dc7 is a 3 chain structure with sequence from Lactobacillus plantarum. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:, ,
NonStd Res:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3dc7, resolution 2.12Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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