3d3s: Difference between revisions

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[[Image:3d3s.png|left|200px]]


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==Crystal structure of L-2,4-diaminobutyric acid acetyltransferase from Bordetella parapertussis==
The line below this paragraph, containing "STRUCTURE_3d3s", creates the "Structure Box" on the page.
<StructureSection load='3d3s' size='340' side='right'caption='[[3d3s]], [[Resolution|resolution]] 1.87&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3d3s]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Borpa Borpa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D3S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D3S FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DAB:2,4-DIAMINOBUTYRIC+ACID'>DAB</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-->
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
{{STRUCTURE_3d3s|  PDB=3d3s  |  SCENE=  }}
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ectA, BPP1888 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=257311 BORPA])</td></tr>
 
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Diaminobutyrate_acetyltransferase Diaminobutyrate acetyltransferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.3.1.178 2.3.1.178] </span></td></tr>
===Crystal structure of L-2,4-diaminobutyric acid acetyltransferase from Bordetella parapertussis===
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d3s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d3s OCA], [https://pdbe.org/3d3s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d3s RCSB], [https://www.ebi.ac.uk/pdbsum/3d3s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d3s ProSAT], [https://www.topsan.org/Proteins/MCSG/3d3s TOPSAN]</span></td></tr>
 
</table>
 
== Function ==
==About this Structure==
[[https://www.uniprot.org/uniprot/ECTA_BORPA ECTA_BORPA]] Catalyzes the acetylation of L-2,4-diaminobutyrate (DABA) to gamma-N-acetyl-alpha,gamma-diaminobutyric acid (ADABA) with acetyl coenzyme A.  
3D3S is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Bordetella_parapertussis_12822 Bordetella parapertussis 12822]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D3S OCA].  
== Evolutionary Conservation ==
[[Category: Bordetella parapertussis 12822]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d3/3d3s_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3d3s ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Borpa]]
[[Category: Diaminobutyrate acetyltransferase]]
[[Category: Diaminobutyrate acetyltransferase]]
[[Category: Jedrzejczak, R.]]
[[Category: Large Structures]]
[[Category: Joachimiak, A.]]
[[Category: Jedrzejczak, R]]
[[Category: Kim, Y.]]
[[Category: Joachimiak, A]]
[[Category: MCSG, Midwest Center for Structural Genomics.]]
[[Category: Kim, Y]]
[[Category: Volkart, L.]]
[[Category: Structural genomic]]
[[Category: Volkart, L]]
[[Category: Acyltransferase]]
[[Category: Acyltransferase]]
[[Category: Alpha-beta-alpha sandwich]]
[[Category: Alpha-beta-alpha sandwich]]
[[Category: Mcsg]]
[[Category: Mcsg]]
[[Category: Midwest center for structural genomic]]
[[Category: PSI, Protein structure initiative]]
[[Category: Protein structure initiative]]
[[Category: Psi-2]]
[[Category: Structural genomic]]
[[Category: Transferase]]
[[Category: Transferase]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 15:09:50 2008''

Latest revision as of 10:52, 2 February 2022

Crystal structure of L-2,4-diaminobutyric acid acetyltransferase from Bordetella parapertussisCrystal structure of L-2,4-diaminobutyric acid acetyltransferase from Bordetella parapertussis

Structural highlights

3d3s is a 4 chain structure with sequence from Borpa. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:, ,
NonStd Res:
Gene:ectA, BPP1888 (BORPA)
Activity:Diaminobutyrate acetyltransferase, with EC number 2.3.1.178
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

[ECTA_BORPA] Catalyzes the acetylation of L-2,4-diaminobutyrate (DABA) to gamma-N-acetyl-alpha,gamma-diaminobutyric acid (ADABA) with acetyl coenzyme A.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3d3s, resolution 1.87Å

Drag the structure with the mouse to rotate

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OCA
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