3d1p: Difference between revisions

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-[[Image:3d1p.png|left|200px]]
-{{STRUCTURE_3d1p|  PDB=3d1p  |  SCENE=  }}
+==Atomic resolution structure of uncharacterized protein from Saccharomyces cerevisiae==
+<StructureSection load='3d1p' size='340' side='right'caption='[[3d1p]], [[Resolution|resolution]] 0.98&Aring;' scene=''>
-===Atomic resolution structure of uncharacterized protein from Saccharomyces cerevisiae===
+== Structural highlights ==
+<table><tr><td colspan='2'>[[3d1p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D1P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D1P FirstGlance]. <br>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
-==About this Structure==
+<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-[[3d1p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D1P OCA].
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">YOR285W ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])</td></tr>
-[[Category: Saccharomyces cerevisiae]]
+<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Thiosulfate_sulfurtransferase Thiosulfate sulfurtransferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.8.1.1 2.8.1.1] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d1p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d1p OCA], [https://pdbe.org/3d1p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d1p RCSB], [https://www.ebi.ac.uk/pdbsum/3d1p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d1p ProSAT], [https://www.topsan.org/Proteins/MCSG/3d1p TOPSAN]</span></td></tr>
+</table>
+== Function ==
+[[https://www.uniprot.org/uniprot/RDL1_YEAST RDL1_YEAST]] Thiosulfate sulfurtransferase which catalyzes the transfer of sulfane sulfur from thiosulfate to cyanide.<ref>PMID:19864628</ref>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d1/3d1p_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3d1p ConSurf].
+<div style="clear:both"></div>
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Atcc 18824]]
+[[Category: Large Structures]]
 [[Category: Thiosulfate sulfurtransferase]]
-[[Category: Edwards, A M.]]
+[[Category: Edwards, A M]]
-[[Category: Evdokimova, E.]]
+[[Category: Evdokimova, E]]
-[[Category: Joachimiak, A.]]
+[[Category: Joachimiak, A]]
-[[Category: Kudritska, M.]]
+[[Category: Kudritska, M]]
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+[[Category: Structural genomic]]
-[[Category: Nocek, B.]]
+[[Category: Nocek, B]]
-[[Category: Savchenko, A.]]
+[[Category: Savchenko, A]]
 [[Category: Atomic resolution structure]]
 [[Category: Atomic structure]]
 [[Category: Mcsg]]
-[[Category: Midwest center for structural genomic]]
 [[Category: Mitochondrial rhodanese-like protein]]
 [[Category: Mitochondrion]]
-[[Category: Protein structure initiative]]
+[[Category: PSI, Protein structure initiative]]
-[[Category: Psi]]
-[[Category: Structural genomic]]
 [[Category: Transferase]]