3d1l: Difference between revisions

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[[Image:3d1l.png|left|200px]]


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==Crystal structure of putative NADP oxidoreductase BF3122 from Bacteroides fragilis==
The line below this paragraph, containing "STRUCTURE_3d1l", creates the "Structure Box" on the page.
<StructureSection load='3d1l' size='340' side='right'caption='[[3d1l]], [[Resolution|resolution]] 2.19&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3d1l]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacfn Bacfn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D1L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D1L FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MPR:2-MERCAPTO-PROPION+ALDEHYDE'>MPR</scene></td></tr>
-->
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
{{STRUCTURE_3d1l|  PDB=3d1l  |  SCENE=  }}
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BF3122 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272559 BACFN])</td></tr>
 
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d1l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d1l OCA], [https://pdbe.org/3d1l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d1l RCSB], [https://www.ebi.ac.uk/pdbsum/3d1l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d1l ProSAT], [https://www.topsan.org/Proteins/MCSG/3d1l TOPSAN]</span></td></tr>
===Crystal structure of putative NADP oxidoreductase BF3122 from Bacteroides fragilis===
</table>
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
==About this Structure==
Check<jmol>
3D1L is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacteroides_fragilis_nctc_9343 Bacteroides fragilis nctc 9343]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D1L OCA].  
  <jmolCheckbox>
[[Category: Bacteroides fragilis nctc 9343]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d1/3d1l_consurf.spt"</scriptWhenChecked>
[[Category: Single protein]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Abdullah, J.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Chang, C.]]
  </jmolCheckbox>
[[Category: Hendricks, R.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3d1l ConSurf].
[[Category: Joachimiak, A.]]
<div style="clear:both"></div>
[[Category: MCSG, Midwest Center for Structural Genomics.]]
__TOC__
</StructureSection>
[[Category: Bacfn]]
[[Category: Large Structures]]
[[Category: Abdullah, J]]
[[Category: Chang, C]]
[[Category: Hendricks, R]]
[[Category: Joachimiak, A]]
[[Category: Structural genomic]]
[[Category: Bacteroides fragili]]
[[Category: Bacteroides fragili]]
[[Category: Bf3122]]
[[Category: Bf3122]]
[[Category: Mcsg]]
[[Category: Mcsg]]
[[Category: Midwest center for structural genomic]]
[[Category: Oxidoreductase]]
[[Category: Protein structure initiative]]
[[Category: PSI, Protein structure initiative]]
[[Category: Psi-2]]
[[Category: Putative nadp oxidoreductase]]
[[Category: Putative nadp oxidoreductase]]
[[Category: Structural genomic]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Sep 29 05:25:01 2008''

Latest revision as of 10:50, 2 February 2022

Crystal structure of putative NADP oxidoreductase BF3122 from Bacteroides fragilisCrystal structure of putative NADP oxidoreductase BF3122 from Bacteroides fragilis

Structural highlights

3d1l is a 2 chain structure with sequence from Bacfn. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:,
NonStd Res:
Gene:BF3122 (BACFN)
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3d1l, resolution 2.19Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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