3d1l: Difference between revisions
New page: '''Unreleased structure''' The entry 3d1l is ON HOLD until Jul 04 2009 Authors: Chang, C., Hendricks, R., Abdullah, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG) De... |
No edit summary |
||
| (9 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
==Crystal structure of putative NADP oxidoreductase BF3122 from Bacteroides fragilis== | |||
<StructureSection load='3d1l' size='340' side='right'caption='[[3d1l]], [[Resolution|resolution]] 2.19Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[3d1l]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacfn Bacfn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D1L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D1L FirstGlance]. <br> | |||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MPR:2-MERCAPTO-PROPION+ALDEHYDE'>MPR</scene></td></tr> | |||
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |||
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BF3122 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272559 BACFN])</td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d1l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d1l OCA], [https://pdbe.org/3d1l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d1l RCSB], [https://www.ebi.ac.uk/pdbsum/3d1l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d1l ProSAT], [https://www.topsan.org/Proteins/MCSG/3d1l TOPSAN]</span></td></tr> | |||
</table> | |||
== Evolutionary Conservation == | |||
[[Image:Consurf_key_small.gif|200px|right]] | |||
Check<jmol> | |||
<jmolCheckbox> | |||
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d1/3d1l_consurf.spt"</scriptWhenChecked> | |||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |||
<text>to colour the structure by Evolutionary Conservation</text> | |||
</jmolCheckbox> | |||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3d1l ConSurf]. | |||
<div style="clear:both"></div> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Bacfn]] | |||
[[Category: Large Structures]] | |||
[[Category: Abdullah, J]] | |||
[[Category: Chang, C]] | |||
[[Category: Hendricks, R]] | |||
[[Category: Joachimiak, A]] | |||
[[Category: Structural genomic]] | |||
[[Category: Bacteroides fragili]] | |||
[[Category: Bf3122]] | |||
[[Category: Mcsg]] | |||
[[Category: Oxidoreductase]] | |||
[[Category: PSI, Protein structure initiative]] | |||
[[Category: Putative nadp oxidoreductase]] | |||