3col: Difference between revisions

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-{{Seed}}
-[[Image:3col.png|left|200px]]
-<!--
+==Crystal structure of putative transcription regulator from Lactobacillus plantarum==
-The line below this paragraph, containing "STRUCTURE_3col", creates the "Structure Box" on the page.
+<StructureSection load='3col' size='340' side='right'caption='[[3col]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3col]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Lacpl Lacpl]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3COL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3COL FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
--->
+<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-{{STRUCTURE_3col|  PDB=3col  |  SCENE=  }}
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">lp_3090 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=220668 LACPL])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3col FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3col OCA], [https://pdbe.org/3col PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3col RCSB], [https://www.ebi.ac.uk/pdbsum/3col PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3col ProSAT], [https://www.topsan.org/Proteins/MCSG/3col TOPSAN]</span></td></tr>
-===Crystal structure of putative transcription regulator from Lactobacillus plantarum===
+</table>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
-==About this Structure==
+Check<jmol>
-COL is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Lactobacillus_plantarum_wcfs1 Lactobacillus plantarum wcfs1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3COL OCA].
+  <jmolCheckbox>
-[[Category: Lactobacillus plantarum wcfs1]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/co/3col_consurf.spt"</scriptWhenChecked>
-[[Category: Bigelow, L.]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: Chang, C.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Freeman, L.]]
+  </jmolCheckbox>
-[[Category: Joachimiak, A.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3col ConSurf].
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
+[[Category: Lacpl]]
+[[Category: Large Structures]]
+[[Category: Bigelow, L]]
+[[Category: Chang, C]]
+[[Category: Freeman, L]]
+[[Category: Joachimiak, A]]
+[[Category: Structural genomic]]
 [[Category: Dna-binding]]
 [[Category: Lactobacillus plantarum]]
 [[Category: Mcsg]]
-[[Category: Midwest center for structural genomic]]
+[[Category: PSI, Protein structure initiative]]
-[[Category: Protein structure initiative]]
-[[Category: Psi-2]]
-[[Category: Structural genomic]]
 [[Category: Transcription regulation]]
 [[Category: Transcription regulator]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 14:29:55 2008''