3cdd: Difference between revisions

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[[Image:3cdd.png|left|200px]]


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==Crystal structure of prophage MuSo2, 43 kDa tail protein from Shewanella oneidensis==
The line below this paragraph, containing "STRUCTURE_3cdd", creates the "Structure Box" on the page.
<StructureSection load='3cdd' size='340' side='right'caption='[[3cdd]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3cdd]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Sheon Sheon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CDD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CDD FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-->
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SO_2699 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=211586 SHEON])</td></tr>
{{STRUCTURE_3cdd|  PDB=3cdd  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cdd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cdd OCA], [https://pdbe.org/3cdd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cdd RCSB], [https://www.ebi.ac.uk/pdbsum/3cdd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cdd ProSAT], [https://www.topsan.org/Proteins/MCSG/3cdd TOPSAN]</span></td></tr>
 
</table>
===Crystal structure of prophage MuSo2, 43 kDa tail protein from Shewanella oneidensis===
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
==About this Structure==
  <jmolCheckbox>
3CDD is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CDD OCA].  
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cd/3cdd_consurf.spt"</scriptWhenChecked>
[[Category: Bacteria]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Single protein]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Chang, C.]]
  </jmolCheckbox>
[[Category: Edwards, A M.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cdd ConSurf].
[[Category: Evdokimova, E.]]
<div style="clear:both"></div>
[[Category: Joachimiak, A.]]
__TOC__
[[Category: Kudritska, M.]]
</StructureSection>
[[Category: MCSG, Midwest Center for Structural Genomics.]]
[[Category: Large Structures]]
[[Category: Savchenko, A.]]
[[Category: Sheon]]
[[Category: Chang, C]]
[[Category: Edwards, A M]]
[[Category: Evdokimova, E]]
[[Category: Joachimiak, A]]
[[Category: Kudritska, M]]
[[Category: Structural genomic]]
[[Category: Savchenko, A]]
[[Category: Mcsg]]
[[Category: Mcsg]]
[[Category: Midwest center for structural genomic]]
[[Category: Muso2]]
[[Category: Muso2]]
[[Category: Protein structure initiative]]
[[Category: PSI, Protein structure initiative]]
[[Category: Psi-2]]
[[Category: Shewanella oneidensis mr-1]]
[[Category: Shewanella oneidensis mr-1]]
[[Category: Structural genomic]]
[[Category: Structural protein]]
[[Category: Structural protein]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Sep 29 07:34:33 2008''

Latest revision as of 10:51, 27 January 2022

Crystal structure of prophage MuSo2, 43 kDa tail protein from Shewanella oneidensisCrystal structure of prophage MuSo2, 43 kDa tail protein from Shewanella oneidensis

Structural highlights

3cdd is a 6 chain structure with sequence from Sheon. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
NonStd Res:
Gene:SO_2699 (SHEON)
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3cdd, resolution 2.10Å

Drag the structure with the mouse to rotate

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