3cdd: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
No edit summary
No edit summary
 
(10 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:3cdd.jpg|left|200px]]


{{Structure
==Crystal structure of prophage MuSo2, 43 kDa tail protein from Shewanella oneidensis==
|PDB= 3cdd |SIZE=350|CAPTION= <scene name='initialview01'>3cdd</scene>, resolution 2.10&Aring;
<StructureSection load='3cdd' size='340' side='right'caption='[[3cdd]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND=  
<table><tr><td colspan='2'>[[3cdd]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Sheon Sheon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CDD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CDD FirstGlance]. <br>
|ACTIVITY=  
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
|GENE= SO_2699 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2 Bacteria])
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SO_2699 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=211586 SHEON])</td></tr>
}}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cdd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cdd OCA], [https://pdbe.org/3cdd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cdd RCSB], [https://www.ebi.ac.uk/pdbsum/3cdd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cdd ProSAT], [https://www.topsan.org/Proteins/MCSG/3cdd TOPSAN]</span></td></tr>
 
</table>
'''Crystal structure of prophage MuSo2, 43 kDa tail protein from Shewanella oneidensis'''
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
==About this Structure==
  <jmolCheckbox>
3CDD is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CDD OCA].  
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cd/3cdd_consurf.spt"</scriptWhenChecked>
[[Category: Bacteria]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Single protein]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Chang, C.]]
  </jmolCheckbox>
[[Category: Edwards, A M.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cdd ConSurf].
[[Category: Evdokimova, E.]]
<div style="clear:both"></div>
[[Category: Joachimiak, A.]]
__TOC__
[[Category: Kudritska, M.]]
</StructureSection>
[[Category: MCSG, Midwest Center for Structural Genomics.]]
[[Category: Large Structures]]
[[Category: Savchenko, A.]]
[[Category: Sheon]]
[[Category: mcsg]]
[[Category: Chang, C]]
[[Category: midwest center for structural genomic]]
[[Category: Edwards, A M]]
[[Category: muso2]]
[[Category: Evdokimova, E]]
[[Category: protein structure initiative]]
[[Category: Joachimiak, A]]
[[Category: psi-2]]
[[Category: Kudritska, M]]
[[Category: shewanella oneidensis mr-1]]
[[Category: Structural genomic]]
[[Category: structural genomic]]
[[Category: Savchenko, A]]
[[Category: structural protein]]
[[Category: Mcsg]]
 
[[Category: Muso2]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 19:03:34 2008''
[[Category: PSI, Protein structure initiative]]
[[Category: Shewanella oneidensis mr-1]]
[[Category: Structural protein]]

Latest revision as of 10:51, 27 January 2022

Crystal structure of prophage MuSo2, 43 kDa tail protein from Shewanella oneidensisCrystal structure of prophage MuSo2, 43 kDa tail protein from Shewanella oneidensis

Structural highlights

3cdd is a 6 chain structure with sequence from Sheon. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
NonStd Res:
Gene:SO_2699 (SHEON)
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3cdd, resolution 2.10Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA