3c5o: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:3c5o.jpg|left|200px]]
- {{Structure
+==Crystal structure of the conserved protein of unknown function RPA1785 from Rhodopseudomonas palustris==
-|PDB= 3c5o |SIZE=350|CAPTION= <scene name='initialview01'>3c5o</scene>, resolution 2.20&Aring;
+<StructureSection load='3c5o' size='340' side='right'caption='[[3c5o]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-|SITE= <scene name='pdbsite=AC1:Gol+Binding+Site+For+Residue+D+156'>AC1</scene>
+== Structural highlights ==
-|LIGAND= <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>
+<table><tr><td colspan='2'>[[3c5o]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhopa Rhopa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C5O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C5O FirstGlance]. <br>
-|ACTIVITY=
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-|GENE= RPA1785 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=258594 Rhodopseudomonas palustris CGA009])
+<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-}}
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">RPA1785 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=258594 RHOPA])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c5o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c5o OCA], [https://pdbe.org/3c5o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c5o RCSB], [https://www.ebi.ac.uk/pdbsum/3c5o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c5o ProSAT], [https://www.topsan.org/Proteins/MCSG/3c5o TOPSAN]</span></td></tr>
-'''Crystal structure of the conserved protein of unknown function RPA1785 from Rhodopseudomonas palustris'''
+</table>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
-==About this Structure==
+Check<jmol>
-C5O is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Rhodopseudomonas_palustris_cga009 Rhodopseudomonas palustris cga009]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C5O OCA].
+  <jmolCheckbox>
-[[Category: Rhodopseudomonas palustris cga009]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c5/3c5o_consurf.spt"</scriptWhenChecked>
-[[Category: Single protein]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: Edwards, A M.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Evdokimova, E.]]
+  </jmolCheckbox>
-[[Category: Joachimiak, A.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c5o ConSurf].
-[[Category: Kim, Y.]]
+<div style="clear:both"></div>
-[[Category: Kudritska, M.]]
+__TOC__
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+</StructureSection>
-[[Category: Savchenko, A.]]
+[[Category: Large Structures]]
-[[Category: GOL]]
+[[Category: Rhopa]]
-[[Category: beta-barrel]]
+[[Category: Edwards, A M]]
-[[Category: mcsg]]
+[[Category: Evdokimova, E]]
-[[Category: midwest center for structural genomic]]
+[[Category: Joachimiak, A]]
-[[Category: protein structure initiative]]
+[[Category: Kim, Y]]
-[[Category: psi-2]]
+[[Category: Kudritska, M]]
-[[Category: structural genomic]]
+[[Category: Structural genomic]]
-[[Category: unknown function]]
+[[Category: Savchenko, A]]
+[[Category: Beta-barrel]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 19:02:45 2008''
+[[Category: Mcsg]]
+[[Category: PSI, Protein structure initiative]]
+[[Category: Unknown function]]