3bwb: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-[[Image:3bwb.png|left|200px]]
-<!--
+==Crystal structure of the apo form of spermidine synthase from Trypanosoma cruzi at 2.5 A resolution==
-The line below this paragraph, containing "STRUCTURE_3bwb", creates the "Structure Box" on the page.
+<StructureSection load='3bwb' size='340' side='right'caption='[[3bwb]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3bwb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Trycc Trycc]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BWB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BWB FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
--->
+<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3bwc|3bwc]]</div></td></tr>
-{{STRUCTURE_3bwb|  PDB=3bwb  |  SCENE=  }}
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Tc00.1047053510339.50 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=353153 TRYCC])</td></tr>
+<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Spermidine_synthase Spermidine synthase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.16 2.5.1.16] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bwb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bwb OCA], [https://pdbe.org/3bwb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bwb RCSB], [https://www.ebi.ac.uk/pdbsum/3bwb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bwb ProSAT]</span></td></tr>
+</table>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bw/3bwb_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bwb ConSurf].
+<div style="clear:both"></div>
-===Crystal structure of the apo form of spermidine synthase from Trypanosoma cruzi at 2.5 A resolution===
+==See Also==
+*[[Spermidine synthase 3D structures|Spermidine synthase 3D structures]]
+__TOC__
-==About this Structure==
+</StructureSection>
-[[3bwb]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Trypanosoma_cruzi Trypanosoma cruzi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BWB OCA].
+[[Category: Large Structures]]
 [[Category: Spermidine synthase]]
-[[Category: Trypanosoma cruzi]]
+[[Category: Trycc]]
-[[Category: Bosch, J.]]
+[[Category: Bosch, J]]
-[[Category: Hol, W G.J.]]
+[[Category: Hol, W G.J]]
-[[Category: SGPP, Structural Genomics of Pathogenic Protozoa Consortium.]]
+[[Category: Structural genomic]]
-[[Category: Protein structure initiative]]
+[[Category: PSI, Protein structure initiative]]
-[[Category: Psi]]
 [[Category: Sgpp]]
-[[Category: Spermidine synthase]]
-[[Category: Structural genomic]]
-[[Category: Structural genomics of pathogenic protozoa consortium]]
 [[Category: Transferase]]
 [[Category: Trypanosoma cruzi]]