3bed: Difference between revisions

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 ==Mannose/sorbose specific IIA subunit of phosphotransferase system from Enterococcus faecalis==
-<StructureSection load='3bed' size='340' side='right' caption='[[3bed]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
+<StructureSection load='3bed' size='340' side='right'caption='[[3bed]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3bed]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterococcus_faecalis_v583 Enterococcus faecalis v583]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2iac 2iac]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BED OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BED FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3bed]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Entfa Entfa]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2iac 2iac]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BED OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BED FirstGlance]. <br>
-</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MLY:N-DIMETHYL-LYSINE'>MLY</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MLY:N-DIMETHYL-LYSINE'>MLY</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">EF_0461 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=226185 Enterococcus faecalis V583])</td></tr>
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">EF_0461 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=226185 ENTFA])</td></tr>
-<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bed FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bed OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3bed RCSB], [http://www.ebi.ac.uk/pdbsum/3bed PDBsum], [http://www.topsan.org/Proteins/MCSG/3bed TOPSAN]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bed FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bed OCA], [https://pdbe.org/3bed PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bed RCSB], [https://www.ebi.ac.uk/pdbsum/3bed PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bed ProSAT], [https://www.topsan.org/Proteins/MCSG/3bed TOPSAN]</span></td></tr>
-<table>
+</table>
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/be/3bed_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/be/3bed_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bed ConSurf].
 <div style="clear:both"></div>
 ==See Also==
-*[[Phosphotransferase|Phosphotransferase]]
+*[[Phosphotransferase 3D structures|Phosphotransferase 3D structures]]
 __TOC__
 </StructureSection>
-[[Category: Enterococcus faecalis v583]]
+[[Category: Entfa]]
-[[Category: Joachimiak, A.]]
+[[Category: Large Structures]]
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+[[Category: Joachimiak, A]]
-[[Category: Moy, S.]]
+[[Category: Structural genomic]]
-[[Category: Osipiuk, J.]]
+[[Category: Moy, S]]
-[[Category: Wu, R.]]
+[[Category: Osipiuk, J]]
+[[Category: Wu, R]]
 [[Category: Apc28805]]
 [[Category: Mannose/sorbose]]
 [[Category: Mcsg]]
-[[Category: Midwest center for structural genomic]]
 [[Category: Phosphotransferase system]]
-[[Category: Protein structure initiative]]
+[[Category: PSI, Protein structure initiative]]
-[[Category: Psi-2]]
-[[Category: Structural genomic]]
 [[Category: Transferase]]