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==INTRODUCTION==
This guide to the contents of Proteopedia is maintained manually (not automatically generated) and so is inevitably incomplete. Please be sure to use the [[Help:Searching|search slots at the left]] if you don't find what you are looking for below. Updated:  {{REVISIONDAY2}}-{{REVISIONMONTH}}-{{REVISIONYEAR}} (DD-MM-YYYY)
* Introduction to the Chemistry of Life
 
* Water
'''When you create a new page in Proteopedia, please add it to corresponding topic subpages.'''
 
==Topics Pages Organized by Category==
{{#tree:id=OrganizedByTopic|openlevels=0|
 
* [[Introduction to protein structure]] - A introductory overview of protein structure.
* [[About Macromolecular Structure]] - List of pages about macromolecular structure terms and concepts.
* [[Proteopedia:Topic Pages|Topic pages]] - List of pages about specific proteins or protein families.
* [[Index pages]] - List of pages that list other pages within Proteopedia.
* Basics of Protein Structure
**[[Introduction to protein structure]] - A introductory overview of protein structure
**[[Proteins: primary and secondary structure]]
**[[Myoglobin of Physeter catodon: structure]]
** The Building Blocks
*** [[Amino Acids]]
*** [[Backbone_representations]]
*** [[Peptide]]
**** [[User:Stephen Mills/Peptide tutorial 1|Peptide tutorial 1 part 1]]
**** [[User:Stephen Mills/Peptide tutorial 2|Peptide tutorial 1 part 2]]
 
** Conformational flexibility of a polypeptide chain
*** [[Phi and Psi Angles]]
*** [[Ramachandran Plots]]
*** [[Tutorial:Ramachandran principle and phi psi angles]]
** [[Secondary structure]]
*** [[Helices in Proteins]]
**** [[User:Stephen Mills/Secondary Structure: Helices|Secondary Structure tutorial - Helices]]
*** [[Sheets in Proteins]]
**** [[User:Stephen Mills/Secondary Structure: Sheets|Secondary Structure tutorial - Sheets]]
** [[Structural_templates]]
*** [[Globular_Proteins]]
**** [[Turns in Proteins]]
*** [[Fibrous Proteins]]
**** [[Coiled_coil]]
**** [[Collagen]] - Illustrates the structure of a collagen segment as well as the structure of a mutated tropocollagen.
**** [[Fibroins]]
 
 
** [[Unusual Motifs in Proteins]]
*** [[Cation-pi_interactions]]
*** [[Thermal_motion_of_peptide]]
 
** [[Intrinsically Disordered Protein]]


==BIOMOLECULES==
* Nucleotides, Nucleic Acids, and Genetic Information
**[[Z-DNA]]
* Amino Acids
* Proteins: Primary Structure
* Proteins: Three-Dimensional Structure
* Protein Function: Myoglobin and Hemoglobin, Muscle Contraction, and Antibodies
* Carbohydrates
* Carbohydrates
* Lipids and Biological Membranes
**[[Carbohydrates]]
* Membrane Transport
**[[Carbohydrates II]]
* Cytoskeletal Proteins
** [[Actin]]
** [[Keratins]]
** [[Tropomyosin]]
** [[Tubulin]]
 
* Lipids
**[[Lipids: structure and classification]]
 
* Diseases & Related Topics
** [[Alzheimer's Disease]]
** [[Antibody]]
** [[Bacterial Infections]]
** [[Cancer]]
** [[Coronavirus Disease 2019 (COVID-19)]]
** [[Diabetes & Hypoglycemia]]
** [[Hemophilia]]
** [[HIV]]
** [[Hypertension & Congestive Heart Failure]]
** [[Immune Response]]
** [[Inflammation & Rheumatoid Arthritis]]
** [[Influenza]]
** [[Metabolic Disorders]]
** [[Neurodevelopmental Disorders]]
** [[Oncogenes]]
** [[Pharmaceutical Drugs]]
** [[Pharmaceutical Drug Targets]]
** [[Toxins]]
** [[Viral Infections]]
 
* Enzymes
** [[Hydrolases]]
** [[Isomerases]]
** [[Ligases]]
** [[Lyases]]
** [[Oxidoreductases]]
** [[Transferases]]


==ENZYMES==
* Gene Expression & Replication
* Enzymatic Catalysis
** [[DNA Replication]]
** Serine Hydrolases
** [[Nucleic Acids]]
*** [[Acetylcholinesterase]] (AChE)
** [[Regulation of Gene Expression]]
**** [[Acetylcholine]]
** [[RNAi]]
**** [[Flexibility_of_aromatic_residues_in_acetylcholinesterase]]
** [[Transcription & RNA Processing]]
**** [[AChE inhibitors and substrates]]
** [[Translation]]  
***** [[1eve]] AChE-Aricept complex
* Enzyme Kinetics, Inhibition, and Control
* Biochemical Signaling


==METABOLISM==
* Large Macromolecular Assemblies
* Introduction to Metabolism
** [[Group:MUZIC|Muscle sarcomere: Z-Disk]]
* Glucose Catabolism
** [[Ribosome]]
* Glycogen Metabolism and Gluconeogenesis
** [[Ribosoma 70S]]
* Citric Acid Cycle
** [[Nucleosomes]]
* Electron Transport and Oxidative Phosphorylation
** [[Nucleosome structure]]
* Photosynthesis
* Lipid Metabolism
* Amino Acid Metabolism
* Mammalian Fuel Metabolism: Integration and Regulation


== GENE EXPRESSION AND REPLICATION ==
* Metabolism
* Nucleotide Metabolism
** [[Amino Acid Synthesis & Metabolism]]
* Nucleic Acid Structure
** [[Carbohydrate Metabolism]]
* DNA Replication, Repair, and Recombination
** [[Photosynthesis]]
* Transcription and RNA Processing
** [[Regulation of Gene Expression]]
* Protein Synthesis
** [[Drug Metabolism by CYP450 Enzymes]]
* Regulation of Gene Expression


== METHODS OF STRUCTURE DETERMINATION ==
* Miscellaneous
* X-ray
** [[Colored & Bioluminescent Proteins]]
**[[X-ray_crystallography]]
** [[Coronavirus Disease 2019 (COVID-19)]]
**SAXS
** [[Enzimas: complejo enzima-sustrato]]
* NMR
** [[3D Molecular Models]]
* Electron Microscopy


* Signaling & Transport
** [[Hormone]]
** [[Membrane Channels & Pumps]]


== METHODS OF STRUCTURE & SEQUENCE ANALYSIS  ==
}}
* STRUCTURAL ANALYSIS & VISUALIZATION
__NOTOC__
** Proteopedia
__NOEDITSECTION__
***[[User:Wayne Decatur/Teaching Proteopedia]]
*SEQUENCE ANALYSIS
**[[User:Wayne Decatur/Sequence analysis tools]]
**SAXS
* NMR
* Electron Microscopy

Latest revision as of 01:18, 31 December 2021

This guide to the contents of Proteopedia is maintained manually (not automatically generated) and so is inevitably incomplete. Please be sure to use the search slots at the left if you don't find what you are looking for below. Updated: 31-12-2021 (DD-MM-YYYY)

When you create a new page in Proteopedia, please add it to corresponding topic subpages.

Topics Pages Organized by Category


Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Jaime Prilusky, Joel L. Sussman, Judy Voet, Eran Hodis, Tilman Schirmer, Eric Martz, Yuan-Ping Pang, Wayne Decatur, Helen Ginn, David Canner, Alexander Berchansky, Angel Herraez, Karl Oberholser, Tomas Klumpler, Arthur Cox, Karen L. Lee, Israel Hanukoglu, Alejandro Porto
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