2duy: Difference between revisions

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-[[Image:2duy.jpg|left|200px]]<br /><applet load="2duy" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="2duy, resolution 1.75&Aring;" />
-'''Crystal structure of competence protein ComEA-related protein from Thermus thermophilus HB8'''<br />
-==About this Structure==
+==Crystal structure of competence protein ComEA-related protein from Thermus thermophilus HB8==
-DUY is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus] with <scene name='pdbligand=CL:'>CL</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DUY OCA].
+<StructureSection load='2duy' size='340' side='right'caption='[[2duy]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
-[[Category: Single protein]]
+== Structural highlights ==
-[[Category: Thermus thermophilus]]
+<table><tr><td colspan='2'>[[2duy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DUY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DUY FirstGlance]. <br>
-[[Category: Chen, L.]]
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
-[[Category: Ebihara, A.]]
+<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-[[Category: Liu, Z J.]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2duy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2duy OCA], [https://pdbe.org/2duy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2duy RCSB], [https://www.ebi.ac.uk/pdbsum/2duy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2duy ProSAT], [https://www.topsan.org/Proteins/RSGI/2duy TOPSAN]</span></td></tr>
-[[Category: Niwa, H.]]
+</table>
-[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+== Evolutionary Conservation ==
-[[Category: Shimada, A.]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: Wang, B C.]]
+Check<jmol>
-[[Category: Yokoyama, S.]]
+  <jmolCheckbox>
-[[Category: CL]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/du/2duy_consurf.spt"</scriptWhenChecked>
-[[Category: helix-hairpin-helix]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: national project on protein structural and functional analyses]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: nppsfa]]
+  </jmolCheckbox>
-[[Category: riken structural genomics/proteomics initiative]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2duy ConSurf].
-[[Category: rsgi]]
+<div style="clear:both"></div>
-[[Category: structural genomics]]
+__TOC__
-[[Category: unknown function]]
+</StructureSection>
+[[Category: Large Structures]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 17:03:00 2008''
+[[Category: Thet8]]
+[[Category: Chen, L]]
+[[Category: Ebihara, A]]
+[[Category: Liu, Z J]]
+[[Category: Niwa, H]]
+[[Category: Structural genomic]]
+[[Category: Shimada, A]]
+[[Category: Wang, B C]]
+[[Category: Yokoyama, S]]
+[[Category: Helix-hairpin-helix]]
+[[Category: National project on protein structural and functional analyse]]
+[[Category: Nppsfa]]
+[[Category: Rsgi]]
+[[Category: Unknown function]]