2l12: Difference between revisions
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< | ==Solution NMR structure of the chromobox protein 7 with H3K9me3== | ||
<StructureSection load='2l12' size='340' side='right'caption='[[2l12]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | |||
You may | == Structural highlights == | ||
<table><tr><td colspan='2'>[[2l12]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2L12 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2L12 FirstGlance]. <br> | |||
or | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=M3L:N-TRIMETHYLLYSINE'>M3L</scene></td></tr> | ||
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CBX7, RP4-742C19.7-003 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2l12 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2l12 OCA], [https://pdbe.org/2l12 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2l12 RCSB], [https://www.ebi.ac.uk/pdbsum/2l12 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2l12 ProSAT]</span></td></tr> | |||
</table> | |||
== Evolutionary Conservation == | |||
[[Image:Consurf_key_small.gif|200px|right]] | |||
Check<jmol> | |||
<jmolCheckbox> | |||
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l1/2l12_consurf.spt"</scriptWhenChecked> | |||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |||
<text>to colour the structure by Evolutionary Conservation</text> | |||
</jmolCheckbox> | |||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2l12 ConSurf]. | |||
<div style="clear:both"></div> | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
The eight mammalian Cbx proteins are chromodomain-containing proteins involved in regulation of heterochromatin, gene expression, and developmental programs. They are evolutionarily related to the Drosophila HP1 (dHP1) and Pc (dPc) proteins that are key components of chromatin-associated complexes capable of recognizing repressive marks such as trimethylated Lys-9 and Lys-27, respectively, on histone H3. However, the binding specificity and function of the human homologs, Cbx1-8, remain unclear. To this end we employed structural, biophysical, and mutagenic approaches to characterize the molecular determinants of sequence contextual methyllysine binding to human Cbx1-8 proteins. Although all three human HP1 homologs (Cbx1, -3, -5) replicate the structural and binding features of their dHP counterparts, the five Pc homologs (Cbx2, -4, -6, -7, -8) bind with lower affinity to H3K9me3 or H3K27me3 peptides and are unable to distinguish between these two marks. Additionally, peptide permutation arrays revealed a greater sequence tolerance within the Pc family and suggest alternative nonhistone sequences as potential binding targets for this class of chromodomains. Our structures explain the divergence of peptide binding selectivity in the Pc subfamily and highlight previously unrecognized features of the chromodomain that influence binding and specificity. | |||
Recognition and specificity determinants of the human cbx chromodomains.,Kaustov L, Ouyang H, Amaya M, Lemak A, Nady N, Duan S, Wasney GA, Li Z, Vedadi M, Schapira M, Min J, Arrowsmith CH J Biol Chem. 2011 Jan 7;286(1):521-9. Epub 2010 Nov 3. PMID:21047797<ref>PMID:21047797</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
== | </div> | ||
<div class="pdbe-citations 2l12" style="background-color:#fffaf0;"></div> | |||
[[Category: | == References == | ||
[[Category: Arrowsmith, C | <references/> | ||
[[Category: Edwards, A | __TOC__ | ||
[[Category: Fares, C | </StructureSection> | ||
[[Category: Gutmanas, A | [[Category: Human]] | ||
[[Category: Kaustov, L | [[Category: Large Structures]] | ||
[[Category: Lemak, A | [[Category: Arrowsmith, C]] | ||
[[Category: Loppnau, P | [[Category: Edwards, A]] | ||
[[Category: Min, J | [[Category: Fares, C]] | ||
[[Category: Quang, H | [[Category: Gutmanas, A]] | ||
[[Category: Kaustov, L]] | |||
[[Category: Lemak, A]] | |||
[[Category: Loppnau, P]] | |||
[[Category: Min, J]] | |||
[[Category: Quang, H]] | |||
[[Category: Structural genomic]] | |||
[[Category: Chromodomain]] | [[Category: Chromodomain]] | ||
[[Category: Sgc]] | [[Category: Sgc]] | ||
[[Category: Transcription regulator]] | [[Category: Transcription regulator]] | ||
