6udc: Difference between revisions

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-'''Unreleased structure'''
-The entry 6udc is ON HOLD
+==Spectroscopic and structural characterization of a genetically encoded direct sensor for protein-ligand interactions==
+<StructureSection load='6udc' size='340' side='right'caption='[[6udc]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[6udc]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/As_4.1583 As 4.1583]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UDC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6UDC FirstGlance]. <br>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BTN:BIOTIN'>BTN</scene></td></tr>
+<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=DV7:'>DV7</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6udc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6udc OCA], [https://pdbe.org/6udc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6udc RCSB], [https://www.ebi.ac.uk/pdbsum/6udc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6udc ProSAT]</span></td></tr>
+</table>
+== Function ==
+[[https://www.uniprot.org/uniprot/SAV_STRAV SAV_STRAV]] The biological function of streptavidin is not known. Forms a strong non-covalent specific complex with biotin (one molecule of biotin per subunit of streptavidin).
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Fluorescent noncanonical amino acids (fNCAAs) could serve as starting points for the rational design of protein-based fluorescent sensors of biological activity. However, efforts toward this goal are likely hampered by a lack of atomic-level characterization of fNCAAs within proteins. Here, we describe the spectroscopic and structural characterization of five streptavidin mutants that contain the fNCAA l-(7-hydroxycoumarin-4-yl)ethylglycine (7-HCAA) at sites proximal to the binding site of its substrate, biotin. Many of the mutants exhibited altered fluorescence spectra in response to biotin binding, which included both increases and decreases in fluorescence intensity as well as red- or blue-shifted emission maxima. Structural data were also obtained for three of the five mutants. The crystal structures shed light on interactions between 7-HCAA and functional groups, contributed either by the protein or by the substrate, that may be responsible for the observed changes in the 7-HCAA spectra. These data could be used in future studies aimed at the rational design of fluorescent, protein-based sensors of small molecule binding or dissociation.
-Authors: Mills, J.H., Gleason, P.R., Simmons, C.R., Henderson, J.N., Kartchner, B.K.
+Structural Origins of Altered Spectroscopic Properties upon Ligand Binding in Proteins Containing a Fluorescent Noncanonical Amino Acid.,Gleason PR, Kolbaba-Kartchner B, Henderson JN, Stahl EP, Simmons CR, Mills JH Biochemistry. 2021 Aug 31;60(34):2577-2585. doi: 10.1021/acs.biochem.1c00291., Epub 2021 Aug 20. PMID:34415744<ref>PMID:34415744</ref>
-Description: Spectroscopic and structural characterization of a genetically encoded direct sensor for protein-ligand interactions
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-[[Category: Unreleased Structures]]
+</div>
-[[Category: Simmons, C.R]]
+<div class="pdbe-citations 6udc" style="background-color:#fffaf0;"></div>
-[[Category: Mills, J.H]]
-[[Category: Henderson, J.N]]
+==See Also==
-[[Category: Kartchner, B.K]]
+*[[Avidin 3D structures|Avidin 3D structures]]
-[[Category: Gleason, P.R]]
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: As 4 1583]]
+[[Category: Large Structures]]
+[[Category: Gleason, P R]]
+[[Category: Henderson, J N]]
+[[Category: Kartchner, B K]]
+[[Category: Mills, J H]]
+[[Category: Simmons, C R]]
+[[Category: Biosensor]]
+[[Category: Fluorescence]]
+[[Category: Fluorescent protein]]
+[[Category: Ligand detection]]
+[[Category: Non-canonical amino acid]]
+[[Category: Small molecule biosensor]]
+[[Category: Unnatural amino acid]]