Human lactoferrin: Difference between revisions
New page: {{STRUCTURE_1dsn|PDB=1dsn|SCENE=}} =Amino-Terminal Half-Molecule of Human Lactoferrin= Human lactoferrin, LF, is a protein in the transferrin family. As such, it has the ability to tightly... |
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<StructureSection load='1dsn' size='450' side='right' scene='' caption='Human lactoferrin complex with Fe and carbonate, [[1dsn]]'> | |||
=Amino-Terminal Half-Molecule of Human Lactoferrin= | =Amino-Terminal Half-Molecule of Human Lactoferrin= | ||
Human lactoferrin, LF, is a protein in the transferrin family. As such, it has the ability to tightly bind iron in conjunction with a large-scale conformational change associated with iron binding and release.<ref name="faber">PMID:8594202</ref> These properties give lactoferrin the ability to regulate iron, and possibly other metal, ion levels in the fluids and secretions, such as milk, of animals.<ref name="faber" /> Lactoferrin is folded into two lobes: the N-terminal half, LF<sub>N</sub> ([[1dsn]]), and the C-terminal half, LF<sub>C</sub>. The two LF lobes have 37% homology and very similar tertiary structures; it has been suggested that the two lobes are the product of gene duplication.<ref name="farnaud" /> Each lobe of LF<sub>N</sub> is further subdivided into two similarly sized α and β domains (Figure 1); the <scene name='Sandbox_Reserved_302/Ligand_site/1'>iron binding site</scene> is situated in a deep cleft between the two domains.<ref name="faber" /> | Human lactoferrin, LF, is a protein in the transferrin family. As such, it has the ability to tightly bind iron in conjunction with a large-scale conformational change associated with iron binding and release.<ref name="faber">PMID:8594202</ref> These properties give lactoferrin the ability to regulate iron, and possibly other metal, ion levels in the fluids and secretions, such as milk, of animals.<ref name="faber" /> Lactoferrin is folded into two lobes: the N-terminal half, LF<sub>N</sub> ([[1dsn]]), and the C-terminal half, LF<sub>C</sub>. The two LF lobes have 37% homology and very similar tertiary structures; it has been suggested that the two lobes are the product of gene duplication.<ref name="farnaud" /> Each lobe of LF<sub>N</sub> is further subdivided into two similarly sized α and β domains (Figure 1); the <scene name='Sandbox_Reserved_302/Ligand_site/1'>iron binding site</scene> is situated in a deep cleft between the two domains.<ref name="faber" /> | ||
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=Structure= | =Structure= | ||
[[Image:1DSN_Domains.png|left|thumb|'''Figure 1.''' Cartoon illustrating the alpha (green) and beta (magenta) domains of LF<sub>N</sub>]] | [[Image:1DSN_Domains.png|left|thumb|'''Figure 1.''' Cartoon illustrating the alpha (green) and beta (magenta) domains of LF<sub>N</sub>]] | ||
{{Clear}} | |||
The amino-terminal half-molecule of human lactoferrin (LF<sub>N</sub>) is comprised of a single 333 amino acid chain divided into two similarly-sized α and β domains. The iron binding site is located within a deep cleft between the lobes, where iron is bound by <scene name='Sandbox_Reserved_302/Helix_3_and_5/2'>Helices 3 and 5</scene> of the α and β domains, respectively. Iron, which is bound to a carboxylate ion, is bound by Asp60, Ala123, and Gly124. Although unwound in LF<sub>N</sub>, <scene name='Sandbox_Reserved_302/Pigtail/1'>residues 313 to 333</scene> form a helix when joined to LF<sub>C</sub>, forming the full LF protein.<ref name="faber" /> | The amino-terminal half-molecule of human lactoferrin (LF<sub>N</sub>) is comprised of a single 333 amino acid chain divided into two similarly-sized α and β domains. The iron binding site is located within a deep cleft between the lobes, where iron is bound by <scene name='Sandbox_Reserved_302/Helix_3_and_5/2'>Helices 3 and 5</scene> of the α and β domains, respectively. Iron, which is bound to a carboxylate ion, is bound by Asp60, Ala123, and Gly124. Although unwound in LF<sub>N</sub>, <scene name='Sandbox_Reserved_302/Pigtail/1'>residues 313 to 333</scene> form a helix when joined to LF<sub>C</sub>, forming the full LF protein.<ref name="faber" /> | ||
The structure of LF<sub>N</sub> undergoes a dramatic conformational change upon iron binding. Upon iron binding, the two domains of LF<sub>N</sub> undergo a rigid 54.1º rotation about a <scene name='Sandbox_Reserved_302/Hinge/1'>screw axis</scene> that passes through Thr90 and Pro251.<ref name="gerstein">PMID:8230220</ref> | The structure of LF<sub>N</sub> undergoes a dramatic conformational change upon iron binding. Upon iron binding, the two domains of LF<sub>N</sub> undergo a rigid 54.1º rotation about a <scene name='Sandbox_Reserved_302/Hinge/1'>screw axis</scene> that passes through Thr90 and Pro251.<ref name="gerstein">PMID:8230220</ref> | ||
To visualize the <jmol> | |||
<jmolLink> | |||
<script>load files "=1CB6" "=1LCF";model 0;cartoon only;domain2 = {(92-249 or 1092-1249)};select domain2 and _C;color green; | |||
structures = [{1.1}, {2.1}]; | |||
domains = [[{not domain2},{not domain2}, {alpha and not domain2 and not altloc="B"}], [{domain2}, {(91,1091,250,1250) and *.CA}, {alpha and domain2 and not altloc="B"}],];moveto 1.0 { 880 471 63 56.8} 132.25 0.0 0.0 {2.646000000000001 15.972 -7.2715} 63.954979842981245 {0 0 0} 0 0 0 3.0 0.0 0.0; | |||
script "https://proteopedia.org/wiki/images/a/a2/Storymorph.spt";superimpose(structures,domains,1);model 1;delay 0.5;model 2;delay 0.5;model 1; | |||
</script> | |||
<text>domain motion</text> | |||
</jmolLink> | |||
</jmol>, we first load the two structures and superimpose them. You can choose a viewing orientation before pressing the morph button, which will visualize the conformational change from structure 1CB6 to 1LCF and back again<ref>The [[Jmol/Storymorph|Storymorph Jmol scripts]] creates the interpolated coordinates of the morph on the fly.</ref> | |||
. | |||
<jmol> | |||
<jmolButton> | |||
<script>morph_palindrome = 1; | |||
morph(15,structures,domains)</script> | |||
<text>Morph</text> | |||
</jmolButton> | |||
</jmol> <jmol> | |||
<jmolButton> | |||
<script>select protein;spacefill only;</script> | |||
<text>spacefill</text> | |||
</jmolButton> | |||
</jmol> | |||
=Function & Application= | =Function & Application= | ||
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[http://en.wikipedia.org/wiki/Lactoferrin Lactoferrin] at Wikipedia | [http://en.wikipedia.org/wiki/Lactoferrin Lactoferrin] at Wikipedia | ||
==3D structures of human lactoferrin== | |||
[[Lactoferrin]] | |||
</StructureSection> | |||
=References= | =References= | ||
<references /> | <references /> | ||
Page originally authored by Christian Axen | Page originally authored by [http://proteopedia.org/wiki/index.php/User:Christian_Axen Christian Axen] | ||