SARS-CoV-2 spike protein fusion transformation: Difference between revisions
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<text>alternate pathway</text> | <text>alternate pathway</text> | ||
</jmolLink> | </jmolLink> | ||
</jmol> between the two conformations shows how some secondary structure is retained while structural elements change orientation and position substantially. | </jmol> <ref>The [[Jmol/Storymorph|Storymorph Jmol scripts]] were used to create the interpolation shown in the morph. [https://proteopedia.org/wiki/index.php/Image:Spike_SARS_CoV_2_storymorph.pdb|Coordinates] available on Proteopedia</ref> between the two conformations shows how some secondary structure is retained while structural elements change orientation and position substantially. USe the button above to start and pause the morph. | ||
<jmol> | <jmol> | ||
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was executed (~45 sec). The numeric parameters in that command were determined by trial and error (see [[Jmol/Cavities pockets and tunnels]]). The cavity surface data were saved as Jmol voxel data, and uploaded to Proteopedia as [[Image:6zgi-cavities.jvxl]]. The button above reads that file, rather than re-calculating the cavities, in order to display the interior cavity surface data much more quickly. See also [[Jmol/Cavities pockets and tunnels]]. | was executed (~45 sec). The numeric parameters in that command were determined by trial and error (see [[Jmol/Cavities pockets and tunnels]]). The cavity surface data were saved as Jmol voxel data, and uploaded to Proteopedia as [[Image:6zgi-cavities.jvxl]]. The button above reads that file, rather than re-calculating the cavities, in order to display the interior cavity surface data much more quickly. See also [[Jmol/Cavities pockets and tunnels]]. | ||
== | ==Acknowledgement== | ||
Eric Martz | Eric Martz thanks Deborah Spitz for a critique that improved this article. | ||
== References and Notes == | == References and Notes == | ||
<references/> | <references/> | ||