2r8d: Difference between revisions

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New page: left|200px<br /><applet load="2r8d" size="350" color="white" frame="true" align="right" spinBox="true" caption="2r8d, resolution 2.000Å" /> '''The structure of tr...
 
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[[Image:2r8d.jpg|left|200px]]<br /><applet load="2r8d" size="350" color="white" frame="true" align="right" spinBox="true"
caption="2r8d, resolution 2.000&Aring;" />
'''The structure of transporter associated domain CorC_HlyC from a Xylella fastidiosa Temecula1 hemolysin in complex with Mg++ and Mn++'''<br />


==About this Structure==
==The structure of transporter associated domain CorC_HlyC from a Xylella fastidiosa Temecula1 hemolysin in complex with Mg++ and Mn++==
2R8D is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Xylella_fastidiosa_temecula1 Xylella fastidiosa temecula1] with <scene name='pdbligand=MN:'>MN</scene> and <scene name='pdbligand=MG:'>MG</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R8D OCA].  
<StructureSection load='2r8d' size='340' side='right'caption='[[2r8d]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
[[Category: Single protein]]
== Structural highlights ==
[[Category: Xylella fastidiosa temecula1]]
<table><tr><td colspan='2'>[[2r8d]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Xylft Xylft]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R8D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R8D FirstGlance]. <br>
[[Category: Cuff, M.E.]]
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
[[Category: Joachimiak, A.]]
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MLY:N-DIMETHYL-LYSINE'>MLY</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
[[Category: MCSG, Midwest.Center.for.Structural.Genomics.]]
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2oai|2oai]]</div></td></tr>
[[Category: Volkart, L.]]
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">tlyC ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=183190 XYLFT])</td></tr>
[[Category: MG]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r8d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r8d OCA], [https://pdbe.org/2r8d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r8d RCSB], [https://www.ebi.ac.uk/pdbsum/2r8d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r8d ProSAT], [https://www.topsan.org/Proteins/MCSG/2r8d TOPSAN]</span></td></tr>
[[Category: MN]]
</table>
[[Category: corc]]
== Evolutionary Conservation ==
[[Category: hemolysin]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: mcsg]]
Check<jmol>
[[Category: midwest center for structural genomics]]
  <jmolCheckbox>
[[Category: pfam03471]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r8/2r8d_consurf.spt"</scriptWhenChecked>
[[Category: protein structure initiative]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: psi-2]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: structural genomics]]
  </jmolCheckbox>
[[Category: toxin]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r8d ConSurf].
<div style="clear:both"></div>


''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 12:16:18 2008''
==See Also==
*[[Hemolysin 3D structures|Hemolysin 3D structures]]
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Xylft]]
[[Category: Cuff, M E]]
[[Category: Joachimiak, A]]
[[Category: Structural genomic]]
[[Category: Volkart, L]]
[[Category: Corc]]
[[Category: Hemolysin]]
[[Category: Mcsg]]
[[Category: Pfam03471]]
[[Category: PSI, Protein structure initiative]]
[[Category: Toxin]]

Latest revision as of 07:17, 2 July 2021

The structure of transporter associated domain CorC_HlyC from a Xylella fastidiosa Temecula1 hemolysin in complex with Mg++ and Mn++The structure of transporter associated domain CorC_HlyC from a Xylella fastidiosa Temecula1 hemolysin in complex with Mg++ and Mn++

Structural highlights

2r8d is a 1 chain structure with sequence from Xylft. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:,
NonStd Res:,
Gene:tlyC (XYLFT)
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

2r8d, resolution 2.00Å

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