2qsd: Difference between revisions

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==Crystal structure of a protein Il1583 from Idiomarina loihiensis==
==Crystal structure of a protein Il1583 from Idiomarina loihiensis==
<StructureSection load='2qsd' size='340' side='right' caption='[[2qsd]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
<StructureSection load='2qsd' size='340' side='right'caption='[[2qsd]]' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2qsd]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Idiomarina_loihiensis Idiomarina loihiensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QSD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2QSD FirstGlance]. <br>
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QSD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QSD FirstGlance]. <br>
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene><br>
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qsd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qsd OCA], [https://pdbe.org/2qsd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qsd RCSB], [https://www.ebi.ac.uk/pdbsum/2qsd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qsd ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2qsd TOPSAN]</span></td></tr>
<tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
</table>
<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">IL1583 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=135577 Idiomarina loihiensis])</td></tr>
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2qsd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qsd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2qsd RCSB], [http://www.ebi.ac.uk/pdbsum/2qsd PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2qsd TOPSAN]</span></td></tr>
<table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qs/2qsd_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qs/2qsd_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qsd ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Idiomarina loihiensis]]
[[Category: Large Structures]]
[[Category: Almo, S C.]]
[[Category: Almo SC]]
[[Category: Bain, K.]]
[[Category: Bain K]]
[[Category: Bonanno, J.]]
[[Category: Bonanno J]]
[[Category: Burley, S K.]]
[[Category: Burley SK]]
[[Category: Gheyi, T.]]
[[Category: Gheyi T]]
[[Category: Koss, J.]]
[[Category: Koss J]]
[[Category: Mckenzie, C.]]
[[Category: Mckenzie C]]
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
[[Category: Patskovsky Y]]
[[Category: Patskovsky, Y.]]
[[Category: Romero R]]
[[Category: Romero, R.]]
[[Category: Rutter M]]
[[Category: Rutter, M.]]
[[Category: Sauder JM]]
[[Category: Sauder, J M.]]
[[Category: Wasserman SR]]
[[Category: Wasserman, S R.]]
[[Category: New york sgx research center for structural genomic]]
[[Category: New york structural genomics research consortium]]
[[Category: Nysgrc]]
[[Category: Nysgxrc]]
[[Category: Protein structure initiative]]
[[Category: Psi-2]]
[[Category: Structural genomic]]
[[Category: Unknown function]]

Latest revision as of 07:04, 2 July 2021

Crystal structure of a protein Il1583 from Idiomarina loihiensisCrystal structure of a protein Il1583 from Idiomarina loihiensis

Structural highlights

Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA