2qm0: Difference between revisions

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OCA

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 ==Crystal structure of BES protein from Bacillus cereus==
-<StructureSection load='2qm0' size='340' side='right' caption='[[2qm0]], [[Resolution|resolution]] 1.84&Aring;' scene=''>
+<StructureSection load='2qm0' size='340' side='right'caption='[[2qm0]], [[Resolution|resolution]] 1.84&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2qm0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_cereus_atcc_14579 Bacillus cereus atcc 14579]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QM0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2QM0 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2qm0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Baccr Baccr]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QM0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QM0 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
 <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SVY:O-[BIS(1-METHYLETHOXY)PHOSPHORYL]-L-SERINE'>SVY</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BC_3734 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=226900 Bacillus cereus ATCC 14579])</td></tr>
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BC_3734 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=226900 BACCR])</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2qm0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qm0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2qm0 RCSB], [http://www.ebi.ac.uk/pdbsum/2qm0 PDBsum], [http://www.topsan.org/Proteins/MCSG/2qm0 TOPSAN]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qm0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qm0 OCA], [https://pdbe.org/2qm0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qm0 RCSB], [https://www.ebi.ac.uk/pdbsum/2qm0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qm0 ProSAT], [https://www.topsan.org/Proteins/MCSG/2qm0 TOPSAN]</span></td></tr>
 </table>
 == Evolutionary Conservation ==
@@ Line 12: / Line 13: @@
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qm/2qm0_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qm/2qm0_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qm0 ConSurf].
 <div style="clear:both"></div>
 __TOC__
 </StructureSection>
-[[Category: Bacillus cereus atcc 14579]]
+[[Category: Baccr]]
-[[Category: Holzle, D.]]
+[[Category: Large Structures]]
-[[Category: Joachimiak, A.]]
+[[Category: Holzle, D]]
-[[Category: Kim, Y.]]
+[[Category: Joachimiak, A]]
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+[[Category: Kim, Y]]
-[[Category: Maltseva, N.]]
+[[Category: Structural genomic]]
-[[Category: Zawadzka, A.]]
+[[Category: Maltseva, N]]
+[[Category: Zawadzka, A]]
 [[Category: Alpha-beta structure]]
 [[Category: Mcsg]]
-[[Category: Midwest center for structural genomic]]
+[[Category: PSI, Protein structure initiative]]
-[[Category: Protein structure initiative]]
-[[Category: Psi-2]]
-[[Category: Structural genomic]]
 [[Category: Unknown function]]