2p6y: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older edit
No edit summary
No edit summary
 
(14 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:2p6y.jpg|left|200px]]<br /><applet load="2p6y" size="350" color="white" frame="true" align="right" spinBox="true"
caption="2p6y, resolution 1.63&Aring;" />
'''X-ray structure of the protein Q9KM02_VIBCH from Vibrio cholerae at the resolution 1.63 A. Northeast Structural Genomics Consortium target VcR80.'''<br />


==About this Structure==
==X-ray structure of the protein Q9KM02_VIBCH from Vibrio cholerae at the resolution 1.63 A. Northeast Structural Genomics Consortium target VcR80.==
2P6Y is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_cholerae Vibrio cholerae] with <scene name='pdbligand=ZN:'>ZN</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P6Y OCA].  
<StructureSection load='2p6y' size='340' side='right'caption='[[2p6y]], [[Resolution|resolution]] 1.63&Aring;' scene=''>
[[Category: Single protein]]
== Structural highlights ==
[[Category: Vibrio cholerae]]
<table><tr><td colspan='2'>[[2p6y]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillo_virgola_del_koch"_trevisan_1884 "bacillo virgola del koch" trevisan 1884]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P6Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P6Y FirstGlance]. <br>
[[Category: Abashidze, M.]]
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
[[Category: Acton, T B.]]
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
[[Category: B., Rost.]]
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2nmu|2nmu]], [[2hx0|2hx0]], [[2h6l|2h6l]]</div></td></tr>
[[Category: Baran, M C.]]
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VCA0587 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=666 "Bacillo virgola del Koch" Trevisan 1884])</td></tr>
[[Category: Chen, C X.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p6y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p6y OCA], [https://pdbe.org/2p6y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p6y RCSB], [https://www.ebi.ac.uk/pdbsum/2p6y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p6y ProSAT], [https://www.topsan.org/Proteins/NESGC/2p6y TOPSAN]</span></td></tr>
[[Category: Cunningham, K.]]
</table>
[[Category: Fang, Y.]]
== Evolutionary Conservation ==
[[Category: Hunt, J.]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: Jayaraman, S.]]
Check<jmol>
[[Category: Kuzin, A P.]]
  <jmolCheckbox>
[[Category: Liu, J.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p6/2p6y_consurf.spt"</scriptWhenChecked>
[[Category: Montelione, G T.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: NESG, Northeast Structural Genomics Consortium.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Owens, L.]]
  </jmolCheckbox>
[[Category: Tong, L.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p6y ConSurf].
[[Category: Wang, C.]]
<div style="clear:both"></div>
[[Category: Xiao, R.]]
__TOC__
[[Category: ZN]]
</StructureSection>
[[Category: nesg]]
[[Category: Bacillo virgola del koch trevisan 1884]]
[[Category: northeast structural genomics consortium]]
[[Category: Large Structures]]
[[Category: protein structure initiative]]
[[Category: Abashidze, M]]
[[Category: psi-2]]
[[Category: Acton, T B]]
[[Category: q9km02_vibch]]
[[Category: Baran, M C]]
[[Category: structural genomics]]
[[Category: Chen, C X]]
[[Category: vcr80]]
[[Category: Cunningham, K]]
[[Category: x-ray]]
[[Category: Fang, Y]]
 
[[Category: Hunt, J]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:26:33 2008''
[[Category: Jayaraman, S]]
[[Category: Kuzin, A P]]
[[Category: Liu, J]]
[[Category: Montelione, G T]]
[[Category: Structural genomic]]
[[Category: Owens, L]]
[[Category: Rost, B]]
[[Category: Tong, L]]
[[Category: Wang, C]]
[[Category: Xiao, R]]
[[Category: Nesg]]
[[Category: PSI, Protein structure initiative]]
[[Category: Q9km02_vibch]]
[[Category: Unknown function]]
[[Category: Vcr80]]

Latest revision as of 18:17, 17 June 2021

X-ray structure of the protein Q9KM02_VIBCH from Vibrio cholerae at the resolution 1.63 A. Northeast Structural Genomics Consortium target VcR80.X-ray structure of the protein Q9KM02_VIBCH from Vibrio cholerae at the resolution 1.63 A. Northeast Structural Genomics Consortium target VcR80.

Structural highlights

2p6y is a 1 chain structure with sequence from "bacillo_virgola_del_koch"_trevisan_1884 "bacillo virgola del koch" trevisan 1884. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:
NonStd Res:
Gene:VCA0587 ("Bacillo virgola del Koch" Trevisan 1884)
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2p6y, resolution 1.63Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=2p6y&oldid=3414065"