2id3: Difference between revisions

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-[[Image:2id3.gif|left|200px]]
-<!--
+==Crystal structure of transcriptional regulator SCO5951 from Streptomyces coelicolor A3(2)==
-The line below this paragraph, containing "STRUCTURE_2id3", creates the "Structure Box" on the page.
+<StructureSection load='2id3' size='340' side='right'caption='[[2id3]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2id3]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"actinomyces_coelicolor"_(muller_1908)_lieske_1921 "actinomyces coelicolor" (muller 1908) lieske 1921]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ID3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ID3 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
--->
+<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-{{STRUCTURE_2id3|  PDB=2id3  |  SCENE=  }}
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SCO5951 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1902 "Actinomyces coelicolor" (Muller 1908) Lieske 1921])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2id3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2id3 OCA], [https://pdbe.org/2id3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2id3 RCSB], [https://www.ebi.ac.uk/pdbsum/2id3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2id3 ProSAT], [https://www.topsan.org/Proteins/MCSG/2id3 TOPSAN]</span></td></tr>
-'''Crystal structure of transcriptional regulator SCO5951 from Streptomyces coelicolor A3(2)'''
+</table>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
-==About this Structure==
+Check<jmol>
-ID3 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Streptomyces_coelicolor Streptomyces coelicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ID3 OCA].
+  <jmolCheckbox>
-[[Category: Single protein]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/id/2id3_consurf.spt"</scriptWhenChecked>
-[[Category: Streptomyces coelicolor]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: Chruszcz, M.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Cymborowski, M.]]
+  </jmolCheckbox>
-[[Category: Edwards, A.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2id3 ConSurf].
-[[Category: Grabowski, M.]]
+<div style="clear:both"></div>
-[[Category: Gu, J.]]
+__TOC__
-[[Category: Koclega, K D.]]
+</StructureSection>
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+[[Category: Large Structures]]
-[[Category: Minor, W.]]
+[[Category: Chruszcz, M]]
-[[Category: Savchenko, A.]]
+[[Category: Cymborowski, M]]
-[[Category: Xu, X.]]
+[[Category: Edwards, A]]
+[[Category: Grabowski, M]]
+[[Category: Gu, J]]
+[[Category: Joachimiak, A]]
+[[Category: Koclega, K D]]
+[[Category: Structural genomic]]
+[[Category: Minor, W]]
+[[Category: Savchenko, A]]
+[[Category: Xu, X]]
 [[Category: Mcsg]]
-[[Category: Midwest center for structural genomic]]
+[[Category: PSI, Protein structure initiative]]
-[[Category: Protein structure initiative]]
+[[Category: Transcription]]
-[[Category: Psi-2]]
-[[Category: Structural genomic]]
 [[Category: Transcriptional regulator]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May  4 07:21:09 2008''