2i71: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-{{Seed}}
-[[Image:2i71.png|left|200px]]
-<!--
+==Crystal structure of a Conserved Protein of Unknown Function from Sulfolobus solfataricus P2==
-The line below this paragraph, containing "STRUCTURE_2i71", creates the "Structure Box" on the page.
+<StructureSection load='2i71' size='340' side='right'caption='[[2i71]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2i71]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Sulso Sulso]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I71 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2I71 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
--->
+<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-{{STRUCTURE_2i71|  PDB=2i71  |  SCENE=  }}
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SSO1389 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=273057 SULSO])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2i71 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i71 OCA], [https://pdbe.org/2i71 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2i71 RCSB], [https://www.ebi.ac.uk/pdbsum/2i71 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2i71 ProSAT], [https://www.topsan.org/Proteins/MCSG/2i71 TOPSAN]</span></td></tr>
-===Crystal structure of a Conserved Protein of Unknown Function from Sulfolobus solfataricus P2===
+</table>
+== Function ==
+[[https://www.uniprot.org/uniprot/CSX1_SULSO CSX1_SULSO]] CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA) (Potential).
-==About this Structure==
+== Evolutionary Conservation ==
-I71 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Sulfolobus_solfataricus Sulfolobus solfataricus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I71 OCA].
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: Single protein]]
+Check<jmol>
-[[Category: Sulfolobus solfataricus]]
+  <jmolCheckbox>
-[[Category: Edwards, A.]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i7/2i71_consurf.spt"</scriptWhenChecked>
-[[Category: Joachimiak, A.]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Onopriyenko, O.]]
+  </jmolCheckbox>
-[[Category: Savchenko, A.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2i71 ConSurf].
-[[Category: Skarina, T.]]
+<div style="clear:both"></div>
-[[Category: Tan, K.]]
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
+[[Category: Sulso]]
+[[Category: Edwards, A]]
+[[Category: Joachimiak, A]]
+[[Category: Structural genomic]]
+[[Category: Onopriyenko, O]]
+[[Category: Savchenko, A]]
+[[Category: Skarina, T]]
+[[Category: Tan, K]]
 [[Category: Apc6294]]
 [[Category: Conserved hypothetical protein]]
 [[Category: Mcsg]]
-[[Category: Midwest center for structural genomic]]
+[[Category: PSI, Protein structure initiative]]
-[[Category: Protein structure initiative]]
-[[Category: Psi-2]]
-[[Category: Structural genomic]]
 [[Category: Sulfolobus solfataricus p2]]
+[[Category: Unknown function]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Sep 28 21:10:44 2008''