2i5u: Difference between revisions

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OCA

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-[[Image:2i5u.gif|left|200px]]<br /><applet load="2i5u" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="2i5u, resolution 1.50&Aring;" />
-'''Crystal structure of DnaD domain protein from Enterococcus faecalis. Structural genomics target APC85179'''<br />
-==About this Structure==
+==Crystal structure of DnaD domain protein from Enterococcus faecalis. Structural genomics target APC85179==
-I5U is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Enterococcus_faecalis Enterococcus faecalis] with <scene name='pdbligand=MG:'>MG</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I5U OCA].
+<StructureSection load='2i5u' size='340' side='right'caption='[[2i5u]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
-[[Category: Enterococcus faecalis]]
+== Structural highlights ==
-[[Category: Single protein]]
+<table><tr><td colspan='2'>[[2i5u]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Entfa Entfa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I5U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2I5U FirstGlance]. <br>
-[[Category: Bargassa, M.]]
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-[[Category: Joachimiak, A.]]
+<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DnaD ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=226185 ENTFA])</td></tr>
-[[Category: Wu, R.]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2i5u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i5u OCA], [https://pdbe.org/2i5u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2i5u RCSB], [https://www.ebi.ac.uk/pdbsum/2i5u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2i5u ProSAT], [https://www.topsan.org/Proteins/MCSG/2i5u TOPSAN]</span></td></tr>
-[[Category: Zhang, R.]]
+</table>
-[[Category: MG]]
+== Evolutionary Conservation ==
-[[Category: dnad domain protein]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: mcsg]]
+Check<jmol>
-[[Category: midwest center for structural genomics]]
+  <jmolCheckbox>
-[[Category: protein structure initiative]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i5/2i5u_consurf.spt"</scriptWhenChecked>
-[[Category: psi-2]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: structural genomics]]
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 17:49:27 2008''
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2i5u ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
+[[Category: Entfa]]
+[[Category: Large Structures]]
+[[Category: Bargassa, M]]
+[[Category: Joachimiak, A]]
+[[Category: Structural genomic]]
+[[Category: Wu, R]]
+[[Category: Zhang, R]]
+[[Category: Dnad domain protein]]
+[[Category: Mcsg]]
+[[Category: PSI, Protein structure initiative]]
+[[Category: Unknown function]]