2h1j: Difference between revisions

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New page: left|200px<br /><applet load="2h1j" size="350" color="white" frame="true" align="right" spinBox="true" caption="2h1j, resolution 3.10Å" /> '''3.1 A X-ray structur...
 
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[[Image:2h1j.gif|left|200px]]<br /><applet load="2h1j" size="350" color="white" frame="true" align="right" spinBox="true"
caption="2h1j, resolution 3.10&Aring;" />
'''3.1 A X-ray structure of putative Oligoendopeptidase F: Crystals grown by microfluidic seeding'''<br />


==About this Structure==
==3.1 A X-ray structure of putative Oligoendopeptidase F: Crystals grown by microfluidic seeding==
2H1J is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus] with <scene name='pdbligand=ZN:'>ZN</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2H1J OCA].  
<StructureSection load='2h1j' size='340' side='right'caption='[[2h1j]], [[Resolution|resolution]] 3.10&Aring;' scene=''>
 
== Structural highlights ==
==Reference==
<table><tr><td colspan='2'>[[2h1j]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_12980 Atcc 12980]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2H1J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2H1J FirstGlance]. <br>
Time-controlled microfluidic seeding in nL-volume droplets to separate nucleation and growth stages of protein crystallization., Gerdts CJ, Tereshko V, Yadav MK, Dementieva I, Collart F, Joachimiak A, Stevens RC, Kuhn P, Kossiakoff A, Ismagilov RF, Angew Chem Int Ed Engl. 2006 Dec 11;45(48):8156-60. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=17099920 17099920]
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
[[Category: Geobacillus stearothermophilus]]
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
[[Category: Protein complex]]
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2h1n|2h1n]]</div></td></tr>
[[Category: ATCG3D, Accelerated.Technologies.Center.for.Gene.to.3D.Structure.]]
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GK0963 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1422 ATCC 12980])</td></tr>
[[Category: Collart, F.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2h1j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2h1j OCA], [https://pdbe.org/2h1j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2h1j RCSB], [https://www.ebi.ac.uk/pdbsum/2h1j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2h1j ProSAT]</span></td></tr>
[[Category: Dementieva, I.]]
</table>
[[Category: Gerdts, C.J.]]
== Evolutionary Conservation ==
[[Category: Ismagilov, R.F.]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: Joachimiak, A.]]
Check<jmol>
[[Category: Kossiakoff, A.]]
  <jmolCheckbox>
[[Category: Tereshko, V.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/h1/2h1j_consurf.spt"</scriptWhenChecked>
[[Category: ZN]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: accelerated technologies center for gene to 3d structure]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: atcg3d]]
  </jmolCheckbox>
[[Category: microfluidic seeding]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2h1j ConSurf].
[[Category: protein structure initiative]]
<div style="clear:both"></div>
[[Category: psi-2]]
__TOC__
[[Category: structural genomics]]
</StructureSection>
 
[[Category: Atcc 12980]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jan 29 20:12:23 2008''
[[Category: Large Structures]]
[[Category: ATCG3D, Accelerated Technologies Center for Gene to 3D Structure]]
[[Category: Collart, F]]
[[Category: Dementieva, I]]
[[Category: Gerdts, C J]]
[[Category: Ismagilov, R F]]
[[Category: Joachimiak, A]]
[[Category: Kossiakoff, A]]
[[Category: Tereshko, V]]
[[Category: Accelerated technologies center for gene to 3d structure]]
[[Category: Atcg3d]]
[[Category: Hydrolase]]
[[Category: Microfluidic seeding]]
[[Category: PSI, Protein structure initiative]]
[[Category: Structural genomic]]

Latest revision as of 10:29, 17 March 2021

3.1 A X-ray structure of putative Oligoendopeptidase F: Crystals grown by microfluidic seeding3.1 A X-ray structure of putative Oligoendopeptidase F: Crystals grown by microfluidic seeding

Structural highlights

2h1j is a 2 chain structure with sequence from Atcc 12980. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:
NonStd Res:
Gene:GK0963 (ATCC 12980)
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2h1j, resolution 3.10Å

Drag the structure with the mouse to rotate

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