2gkp: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older edit
No edit summary
No edit summary
 
(10 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:2gkp.gif|left|200px]]


{{Structure
==Protein of Unknown Function NMB0488 from Neisseria meningitidis==
|PDB= 2gkp |SIZE=350|CAPTION= <scene name='initialview01'>2gkp</scene>, resolution 1.35&Aring;
<StructureSection load='2gkp' size='340' side='right'caption='[[2gkp]], [[Resolution|resolution]] 1.35&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>
<table><tr><td colspan='2'>[[2gkp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Neimb Neimb]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GKP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GKP FirstGlance]. <br>
|ACTIVITY=  
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
|GENE= NMB0488 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=487 Neisseria meningitidis])
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam07262 DUF1436]</span>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">NMB0488 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=122586 NEIMB])</td></tr>
|RELATEDENTRY=
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gkp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gkp OCA], [https://pdbe.org/2gkp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gkp RCSB], [https://www.ebi.ac.uk/pdbsum/2gkp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gkp ProSAT], [https://www.topsan.org/Proteins/MCSG/2gkp TOPSAN]</span></td></tr>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gkp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gkp OCA], [http://www.ebi.ac.uk/pdbsum/2gkp PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2gkp RCSB]</span>
</table>
}}
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
'''Protein of Unknown Function NMB0488 from Neisseria meningitidis'''
Check<jmol>
 
  <jmolCheckbox>
 
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gk/2gkp_consurf.spt"</scriptWhenChecked>
==About this Structure==
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
2GKP is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Neisseria_meningitidis Neisseria meningitidis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GKP OCA].  
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Neisseria meningitidis]]
  </jmolCheckbox>
[[Category: Single protein]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gkp ConSurf].
[[Category: Bargassa, M.]]
<div style="clear:both"></div>
[[Category: Joachimiak, A.]]
__TOC__
[[Category: MCSG, Midwest Center for Structural Genomics.]]
</StructureSection>
[[Category: Osipiuk, J.]]
[[Category: Large Structures]]
[[Category: Volkart, L.]]
[[Category: Neimb]]
[[Category: apc83854]]
[[Category: Bargassa, M]]
[[Category: hypothetical protein]]
[[Category: Joachimiak, A]]
[[Category: mcsg]]
[[Category: Structural genomic]]
[[Category: midwest center for structural genomic]]
[[Category: Osipiuk, J]]
[[Category: protein structure initiative]]
[[Category: Volkart, L]]
[[Category: psi]]
[[Category: Apc83854]]
[[Category: structural genomic]]
[[Category: Hypothetical protein]]
 
[[Category: Mcsg]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 03:17:55 2008''
[[Category: PSI, Protein structure initiative]]
[[Category: Unknown function]]

Latest revision as of 20:26, 10 March 2021

Protein of Unknown Function NMB0488 from Neisseria meningitidisProtein of Unknown Function NMB0488 from Neisseria meningitidis

Structural highlights

2gkp is a 1 chain structure with sequence from Neimb. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:, ,
NonStd Res:
Gene:NMB0488 (NEIMB)
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2gkp, resolution 1.35Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=2gkp&oldid=3366320"