2gkp: Difference between revisions

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-[[Image:2gkp.gif|left|200px]]
- {{Structure
+==Protein of Unknown Function NMB0488 from Neisseria meningitidis==
-|PDB= 2gkp |SIZE=350|CAPTION= <scene name='initialview01'>2gkp</scene>, resolution 1.35&Aring;
+<StructureSection load='2gkp' size='340' side='right'caption='[[2gkp]], [[Resolution|resolution]] 1.35&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND= <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene> and <scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>
+<table><tr><td colspan='2'>[[2gkp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Neimb Neimb]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GKP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GKP FirstGlance]. <br>
-|ACTIVITY=
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-|GENE= NMB0488 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=487 Neisseria meningitidis])
+<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-}}
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">NMB0488 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=122586 NEIMB])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gkp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gkp OCA], [https://pdbe.org/2gkp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gkp RCSB], [https://www.ebi.ac.uk/pdbsum/2gkp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gkp ProSAT], [https://www.topsan.org/Proteins/MCSG/2gkp TOPSAN]</span></td></tr>
-'''Protein of Unknown Function NMB0488 from Neisseria meningitidis'''
+</table>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
-==About this Structure==
+Check<jmol>
-GKP is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Neisseria_meningitidis Neisseria meningitidis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GKP OCA].
+  <jmolCheckbox>
-[[Category: Neisseria meningitidis]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gk/2gkp_consurf.spt"</scriptWhenChecked>
-[[Category: Single protein]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: Bargassa, M.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Joachimiak, A.]]
+  </jmolCheckbox>
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gkp ConSurf].
-[[Category: Osipiuk, J.]]
+<div style="clear:both"></div>
-[[Category: Volkart, L.]]
+__TOC__
-[[Category: BME]]
+</StructureSection>
-[[Category: EDO]]
+[[Category: Large Structures]]
-[[Category: NA]]
+[[Category: Neimb]]
-[[Category: apc83854]]
+[[Category: Bargassa, M]]
-[[Category: hypothetical protein]]
+[[Category: Joachimiak, A]]
-[[Category: mcsg]]
+[[Category: Structural genomic]]
-[[Category: midwest center for structural genomic]]
+[[Category: Osipiuk, J]]
-[[Category: protein structure initiative]]
+[[Category: Volkart, L]]
-[[Category: psi]]
+[[Category: Apc83854]]
-[[Category: structural genomic]]
+[[Category: Hypothetical protein]]
+[[Category: Mcsg]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 17:05:48 2008''
+[[Category: PSI, Protein structure initiative]]
+[[Category: Unknown function]]