2f2g: Difference between revisions

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New page: left|200px<br /><applet load="2f2g" size="450" color="white" frame="true" align="right" spinBox="true" caption="2f2g, resolution 2.10Å" /> '''X-Ray Structure of G...
 
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[[Image:2f2g.gif|left|200px]]<br /><applet load="2f2g" size="450" color="white" frame="true" align="right" spinBox="true"
caption="2f2g, resolution 2.10&Aring;" />
'''X-Ray Structure of Gene Product From Arabidopsis Thaliana AT3G16990'''<br />


==About this Structure==
==X-Ray Structure of Gene Product From Arabidopsis Thaliana AT3G16990==
2F2G is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana] with SO4 and HMH as [http://en.wikipedia.org/wiki/ligands ligands]. This structure superseeds the now removed PDB entry 1Q4M. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2F2G OCA].  
<StructureSection load='2f2g' size='340' side='right'caption='[[2f2g]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
 
== Structural highlights ==
==Reference==
<table><tr><td colspan='2'>[[2f2g]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arath Arath]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1q4m 1q4m]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F2G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2F2G FirstGlance]. <br>
Crystal structure of gene locus At3g16990 from Arabidopsis thaliana., Blommel PG, Smith DW, Bingman CA, Dyer DH, Rayment I, Holden HM, Fox BG, Phillips GN Jr, Proteins. 2004 Oct 1;57(1):221-2. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15326608 15326608]
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HMH:4-AMINO-5-HYDROXYMETHYL-2-METHYLPYRIMIDINE'>HMH</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
[[Category: Arabidopsis thaliana]]
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
[[Category: Single protein]]
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">At3g16990 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
[[Category: Bingman, C.A.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2f2g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f2g OCA], [https://pdbe.org/2f2g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2f2g RCSB], [https://www.ebi.ac.uk/pdbsum/2f2g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2f2g ProSAT], [https://www.topsan.org/Proteins/CESG/2f2g TOPSAN]</span></td></tr>
[[Category: Bitto, E.]]
</table>
[[Category: CESG, Center.for.Eukaryotic.Structural.Genomics.]]
== Evolutionary Conservation ==
[[Category: Johnson, K.A.]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: Jr., G.N.Phillips.]]
Check<jmol>
[[Category: Smith, D.W.]]
  <jmolCheckbox>
[[Category: Wesenberg, G.W.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f2/2f2g_consurf.spt"</scriptWhenChecked>
[[Category: HMH]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: SO4]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: at3g16990]]
  </jmolCheckbox>
[[Category: center for eukaryotic structural genomics]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2f2g ConSurf].
[[Category: center foreukaryotic structural genomics ]]
<div style="clear:both"></div>
[[Category: cesg]]
__TOC__
[[Category: protein structure initiative]]
</StructureSection>
[[Category: psi]]
[[Category: Arath]]
[[Category: structural genomics]]
[[Category: Large Structures]]
[[Category: tena/thi-4/pqqc family]]
[[Category: Bingman, C A]]
[[Category: tena_thi-4 domain]]
[[Category: Bitto, E]]
 
[[Category: Structural genomic]]
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 10:18:57 2007''
[[Category: Johnson, K A]]
[[Category: Phillips, G N]]
[[Category: Smith, D W]]
[[Category: Wesenberg, G W]]
[[Category: At3g16990]]
[[Category: Cesg]]
[[Category: Plant protein]]
[[Category: PSI, Protein structure initiative]]
[[Category: Tena/thi-4/pqqc family]]
[[Category: Tena_thi-4 domain]]

Latest revision as of 13:37, 17 February 2021

X-Ray Structure of Gene Product From Arabidopsis Thaliana AT3G16990X-Ray Structure of Gene Product From Arabidopsis Thaliana AT3G16990

Structural highlights

2f2g is a 2 chain structure with sequence from Arath. This structure supersedes the now removed PDB entry 1q4m. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:,
NonStd Res:
Gene:At3g16990 (ARATH)
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2f2g, resolution 2.10Å

Drag the structure with the mouse to rotate

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OCA
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