2f2g: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older edit
No edit summary
No edit summary
 
(8 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:2f2g.png|left|200px]]


<!--
==X-Ray Structure of Gene Product From Arabidopsis Thaliana AT3G16990==
The line below this paragraph, containing "STRUCTURE_2f2g", creates the "Structure Box" on the page.
<StructureSection load='2f2g' size='340' side='right'caption='[[2f2g]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2f2g]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arath Arath]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1q4m 1q4m]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F2G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2F2G FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HMH:4-AMINO-5-HYDROXYMETHYL-2-METHYLPYRIMIDINE'>HMH</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-->
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
{{STRUCTURE_2f2g|  PDB=2f2g  |  SCENE=  }}
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">At3g16990 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
 
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2f2g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f2g OCA], [https://pdbe.org/2f2g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2f2g RCSB], [https://www.ebi.ac.uk/pdbsum/2f2g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2f2g ProSAT], [https://www.topsan.org/Proteins/CESG/2f2g TOPSAN]</span></td></tr>
===X-Ray Structure of Gene Product From Arabidopsis Thaliana AT3G16990===
</table>
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
==About this Structure==
Check<jmol>
2F2G is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1q4m 1q4m]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F2G OCA].  
  <jmolCheckbox>
 
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f2/2f2g_consurf.spt"</scriptWhenChecked>
==Reference==
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
Crystal structure of gene locus At3g16990 from Arabidopsis thaliana., Blommel PG, Smith DW, Bingman CA, Dyer DH, Rayment I, Holden HM, Fox BG, Phillips GN Jr, Proteins. 2004 Oct 1;57(1):221-2. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15326608 15326608]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Arabidopsis thaliana]]
  </jmolCheckbox>
[[Category: Single protein]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2f2g ConSurf].
[[Category: Bingman, C A.]]
<div style="clear:both"></div>
[[Category: Bitto, E.]]
__TOC__
[[Category: CESG, Center for Eukaryotic Structural Genomics.]]
</StructureSection>
[[Category: Johnson, K A.]]
[[Category: Arath]]
[[Category: Jr., G N.Phillips.]]
[[Category: Large Structures]]
[[Category: Smith, D W.]]
[[Category: Bingman, C A]]
[[Category: Wesenberg, G W.]]
[[Category: Bitto, E]]
[[Category: Structural genomic]]
[[Category: Johnson, K A]]
[[Category: Phillips, G N]]
[[Category: Smith, D W]]
[[Category: Wesenberg, G W]]
[[Category: At3g16990]]
[[Category: At3g16990]]
[[Category: Center for eukaryotic structural genomic]]
[[Category: Center foreukaryotic structural genomic]]
[[Category: Cesg]]
[[Category: Cesg]]
[[Category: Plant protein]]
[[Category: Plant protein]]
[[Category: Protein structure initiative]]
[[Category: PSI, Protein structure initiative]]
[[Category: Psi]]
[[Category: Structural genomic]]
[[Category: Tena/thi-4/pqqc family]]
[[Category: Tena/thi-4/pqqc family]]
[[Category: Tena_thi-4 domain]]
[[Category: Tena_thi-4 domain]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 22:14:02 2008''

Latest revision as of 13:37, 17 February 2021

X-Ray Structure of Gene Product From Arabidopsis Thaliana AT3G16990X-Ray Structure of Gene Product From Arabidopsis Thaliana AT3G16990

Structural highlights

2f2g is a 2 chain structure with sequence from Arath. This structure supersedes the now removed PDB entry 1q4m. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:,
NonStd Res:
Gene:At3g16990 (ARATH)
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2f2g, resolution 2.10Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=2f2g&oldid=3357735"