Proteopedia:DIY:Macros: Difference between revisions

Wayne Decatur (talk | contribs)
mNo edit summary
Wayne Decatur (talk | contribs)
m fix text
 
(14 intermediate revisions by the same user not shown)
Line 9: Line 9:
==Defined Macros==
==Defined Macros==


'''Example #1: Calling a basic macro function'''
The currently listing of defined macro functions can be found at [[Proteopedia:Macros]].
The currently listing of defined macro functions can be found at [[Proteopedia:Macros]].


Line 15: Line 14:


Integrating macro use into JSmol code is straightforward.
Integrating macro use into JSmol code is straightforward.
This example doesn't require any parameter to act. It causes the structure shown to 'bobble()'.
 
'''Example #1: Calling a simple macro function'''
 
This example doesn't require any parameter to act. It causes the structure shown to 'bobble'.
<!--
<!--
<pre>
<pre>
Line 59: Line 61:
</pre>
</pre>


The <code><nowiki>bobble()</nowiki></code> button triggers the action. The other button uses <code><nowiki>exit</nowiki></code> to stop the looping bobble.</br>
The <code><nowiki>bobble()</nowiki></code> button triggers the action. The other button uses <code><nowiki>exit</nowiki></code> to stop the looping bobble.<br/>
You can try the result here:
You can try the result here:


Line 84: Line 86:
(<jmol>
(<jmol>
   <jmolLink>
   <jmolLink>
     <script>script /mc/ktheis.spt;blink('ligand')</script>
     <script>script /mc/ktheis.spt;blink({HEM})</script>
     <text>☼</text>
     <text>☼</text>
   </jmolLink>
   </jmolLink>
</jmol>)
</jmol>)
</pre>
</pre>
'''Doesn't seem to allow anything other than ligand!?!?''' Why doesn't 'HEM' or '[HEM]' work as the peekaboo example seems to indicate it should?!?!


You can try the result here:<br/>
You can try the result here:<br/>
To show ligand(s), click on the green sun symbol in the parentheses --> (<jmol>
To highlight the heme group, click on the green sun symbol in the parentheses --> (<jmol>
   <jmolLink>
   <jmolLink>
     <script>script /mc/ktheis.spt;blink('ligand')</script>
     <script>script /mc/ktheis.spt;blink({HEM})</script>
     <text>☼</text>
     <text>☼</text>
   </jmolLink>
   </jmolLink>
Line 104: Line 104:
'''Example #3: Another showing supplying the macro a parameter'''
'''Example #3: Another showing supplying the macro a parameter'''
   
   
Example code:
Example code:


<pre>
<pre>
(<jmol>
<jmol>
  <jmolLink>
<jmolLink>
     <script>script /mc/ktheis.spt;peekaboo('HEM')</script>
     <script>script /mc/ktheis.spt;peekaboo({HEM})</script>
     <text>Hide Heme for a moment</text>
     <text>Hide Heme for a moment</text>
   </jmolLink>
   </jmolLink>
</jmol>)
</jmol>
</pre>
</pre>
'''Doesn't seem to allow anything other than ligand!?!?''' Why doesn't 'HEM' or '[HEM]' work as the peekaboo example seems to indicate it should?!?!


You can try the result here:<br/>
You can try the result here:<br/>
To show ligand(s), click on the green sun symbol in the parentheses --> (<jmol>
<jmol>
  <jmolLink>
<jmolLink>
     <script>script /mc/ktheis.spt;peekaboo('HEM')</script>
     <script>script /mc/ktheis.spt;peekaboo({HEM})</script>
     <text>Hide Heme for a moment</text>
     <text>Hide Heme for a moment</text>
   </jmolLink>
   </jmolLink>
</jmol>)
</jmol>




Line 131: Line 128:
==Coding New Macros==
==Coding New Macros==


Advanced users who want to code additional macros can get a flavor for the JSmol operating behind the scenes and ideas on how they'd code their own by examining the code for macros already available. To view an example go the [[Proteopedia:Macros]] page and note that examples such as the 'bobble()' example include notes on how you import it using <code><nowiki> script /mc/ktheis.spt</nowiki></code>. In particular note the <code><nowiki>/mc/ktheis.spt</nowiki></code> part after 'script'. That is the address of the script code stored at Proteopeida. Place that part after after <code><nowiki>http://proteopedia.org/wiki/</nowiki></code> so you end up at <code><nowiki>http://proteopedia.org/wiki//mc/ktheis.spt</nowiki></code> where you can see the code for several defined macro functions.
Advanced users who want to code additional macros can get a flavor for the JSmol operating behind the scenes and ideas on how they'd code their own by examining the code for macros already available. To view an example go the [[Proteopedia:Macros]] page and note that examples such as the 'bobble()' example include notes on how you import it using <code><nowiki> script /mc/ktheis.spt</nowiki></code>. In particular note the <code><nowiki>/mc/ktheis.spt</nowiki></code> part after 'script'. That is the address of the script code stored at Proteopeida. Place that part after after <code><nowiki>http://proteopedia.org/wiki/</nowiki></code> so you end up at <code><nowiki>http://proteopedia.org/wiki//mc/ktheis.spt</nowiki></code> where you can see the code for several defined macro functions. Jmol's documentation for user-defined functions, that serve as the basis the use of macros on Proteopedia, can be found [https://chemapps.stolaf.edu/jmol/docs/#functionsuser-definedfunctions here].


</StructureSection>
</StructureSection>

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Wayne Decatur