User:Eric Martz/Sandbox 17: Difference between revisions

(33 intermediate revisions by the same user not shown)

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<br>As in the SAT, the isosurfaces in the PNGJ file have disappeared. But the edited caption appears correctly.

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2020-12-17:

<br>3. <scene name='87/870563/Pngj_with_caption_2020-12-16/3'>Scene 1 saved after editing only the CAPTION</scene>, after further fixes by Jaim (2020-12-17).

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<br>4. <scene name='87/870563/6zgi_mem-prox_cav_4_colors/1'>New PNGJ with membrane-proximal cavity in 4 colors</scene>. These isosurfaces take several minutes to calculate, but when saved as JVXL files, then loaded from the files and cached, and that saved into a new PNGJ file, the results appear in about one second!

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2020-12-19:

<br>5. This green link runs a JSmol script, loading the PNGJ file, and writing the caption directly.

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</jmol>

~~Proteopedia's wiki lacks Template Font Color: {{font color|red|red text?}}.~~

I have not been able to devise a method to color text in the caption. Anything with < or > creates an XML error (page cannot be saved). Using e.g. &lt; can be saved, but confuses JSmol which expects a new command after the ';'.

I have not been able to devise a method to color text in the caption. Anything with < or > creates an XML error (page cannot be saved). Using e.g. ~~<code>~~<~~</code>~~ can be saved, but confuses JSmol which expects a new command after the ';'.

Proteopedia's wiki lacks Template:Font_color: {{font color|red|red text?}}.

6. I tried an indirect method to color caption text. This page saves in Proteopedia, and the JSmol variable captext prints correctly. I can't tell if my assignment to the Javascript variable captext is working. The caption does not display. There are no JSmol errors. There are Javascript warnings, but not errors.

<jmol>

script "http://proteopedia.org/wiki/images/6/69/Colortext.spt"

# captext JSmol variable is only for testing.

captext = "Words with " + colortext("some red", "red") + " in this caption."

javascript captext = "Words with " + colortext("some red", "red") + " in this caption."

capcmd = "changeCaption(captext, '', '')"

javascript @capcmd

</script>

<text>Colored caption test.</text>

</jmolLink>

</jmol>

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2020-12-21:

7. <scene name='87/870563/2020_12_21_retry_4_isosurfaces/1'>Re-try of the 4-isosurface PNGJ</scene> (Image:6zgi-membrane-proximal-cavity-jmol-cr2.5.pngj). WORKS.

8. <scene name='87/870563/2020_12_21_retry_4_isosurfaces/2'>Same scene as 7 with caption edited to include colored text</scene>. WORKS WITH COLORED CAPTION. COLORS done with span classes.

9. <scene name='87/870563/2020_12_21_retry_4_isosurfaces/3'>Same as 8 but with yellow caption text done as a style span</scene>. DOES NOT WORK.

10. <scene name='87/870563/2020_12_21_retry_4_isosurfaces/4'>Same as 9 but with non-breaking space codes removed</scene>. STILL DOES NOT WORK. Evidently style spans are not supported in captions.

11. <scene name='87/870563/2020_12_21_retry_4_isosurfaces/5'>Yellow background text changed to a class span</scene>. WORKS.

====PDB (not PNGJ) scenes====

12. <scene name='87/870563/No_isosurfaces_1d66/2'>A simple scene (no isosurfaces) for testing caption text coloring</scene>. WORKS. FONT COLOR TAGS CAN BE USED IN SCENES NOT INVOLVING PNGJ FILES, BUT BE SURE TO DO BOLD/ITALICS WITH HTML TAGS NOT WIKI MARKUP!

13: <scene name='87/870563/No_isosurfaces_1d66/3'>Test using a color scheme template</scene> for Oxygen. FAILS.

14: <scene name='87/870563/No_isosurfaces_1d66/4'>Single color template method</scene>: <nowiki>{{Font color|red|red text}}</nowiki>. DOES NOT WORK.

15: <scene name='87/870563/No_isosurfaces_1d66/5'>Span style method</scene>. FAILS PREVENTING SCENE OR CAPTION FROM LOADING AT ALL.

</StructureSection>

==See Also==

* [[Image:Colortext.spt]]

* [[Proteopedia:DIY:Templates]]

@@ Line 11: / Line 11: @@
 <br>As in the SAT, the isosurfaces in the PNGJ file have disappeared. But the edited caption appears correctly.
+----
+-12-17:
 <br>3. <scene name='87/870563/Pngj_with_caption_2020-12-16/3'>Scene 1 saved after editing only the CAPTION</scene>, after further fixes by Jaim (2020-12-17).
@@ Line 20: / Line 23: @@
 <br>4. <scene name='87/870563/6zgi_mem-prox_cav_4_colors/1'>New PNGJ with membrane-proximal cavity in 4 colors</scene>. These isosurfaces take several minutes to calculate, but when saved as JVXL files, then loaded from the files and cached, and that saved into a new PNGJ file, the results appear in about one second!
+----
+-12-19:
 <br>5. This green link runs a JSmol script, loading the PNGJ file, and writing the caption directly.
@@ Line 35: / Line 41: @@
 </jmol>
-Proteopedia's wiki lacks Template Font Color: {{font color|red|red text?}}.
+I have not been able to devise a method to color text in the caption. Anything with &lt; or &gt; creates an XML error (page cannot be saved). Using e.g. &amp;lt; can be saved, but confuses JSmol which expects a new command after the ';'.
-I have not been able to devise a method to color text in the caption. Anything with &lt; or &gt; creates an XML error (page cannot be saved). Using e.g. <code>&lt;</code> can be saved, but confuses JSmol which expects a new command after the ';'.
+Proteopedia's wiki lacks Template:Font_color: {{font color|red|red text?}}.
+. I tried an indirect method to color caption text. This page saves in Proteopedia, and the JSmol variable captext prints correctly. I can't tell if my assignment to the Javascript variable captext is working. The caption does not display. There are no JSmol errors. There are Javascript warnings, but not errors.
+<jmol>
+ <jmolLink>
+  <script>
+script "http://proteopedia.org/wiki/images/6/69/Colortext.spt"
+# captext JSmol variable is only for testing.
+captext = "Words with " + colortext("some red", "red") + " in this caption."
+javascript captext = "Words with " + colortext("some red", "red") + " in this caption."
+capcmd = "changeCaption(captext, '', '')"
+javascript @capcmd
+  </script>
+  <text>Colored caption test.</text>
+ </jmolLink>
+</jmol>
+----
+-12-21:
+. <scene name='87/870563/2020_12_21_retry_4_isosurfaces/1'>Re-try of the 4-isosurface PNGJ</scene> (Image:6zgi-membrane-proximal-cavity-jmol-cr2.5.pngj). WORKS.
+. <scene name='87/870563/2020_12_21_retry_4_isosurfaces/2'>Same scene as 7 with caption edited to include colored text</scene>. WORKS WITH COLORED CAPTION. COLORS done with span classes.
+. <scene name='87/870563/2020_12_21_retry_4_isosurfaces/3'>Same as 8 but with yellow caption text done as a style span</scene>. DOES NOT WORK.
+. <scene name='87/870563/2020_12_21_retry_4_isosurfaces/4'>Same as 9 but with non-breaking space codes removed</scene>. STILL DOES NOT WORK. Evidently style spans are not supported in captions.
+. <scene name='87/870563/2020_12_21_retry_4_isosurfaces/5'>Yellow background text changed to a class span</scene>. WORKS.
+====PDB (not PNGJ) scenes====
+. <scene name='87/870563/No_isosurfaces_1d66/2'>A simple scene (no isosurfaces) for testing caption text coloring</scene>. WORKS. FONT COLOR TAGS CAN BE USED IN SCENES NOT INVOLVING PNGJ FILES, BUT BE SURE TO DO BOLD/ITALICS WITH HTML TAGS NOT WIKI MARKUP!
+: <scene name='87/870563/No_isosurfaces_1d66/3'>Test using a color scheme template</scene> for Oxygen. FAILS.
+: <scene name='87/870563/No_isosurfaces_1d66/4'>Single color template method</scene>: <nowiki>{{Font color|red|red text}}</nowiki>. DOES NOT WORK.
+: <scene name='87/870563/No_isosurfaces_1d66/5'>Span style method</scene>. FAILS PREVENTING SCENE OR CAPTION FROM LOADING AT ALL.
 </StructureSection>
+==See Also==
+* [[Image:Colortext.spt]]
+* [[Proteopedia:DIY:Templates]]