User:Eric Martz/Sandbox 17: Difference between revisions
Eric Martz (talk | contribs) No edit summary |
Eric Martz (talk | contribs) No edit summary |
||
| (38 intermediate revisions by the same user not shown) | |||
| Line 11: | Line 11: | ||
<br>As in the SAT, the isosurfaces in the PNGJ file have disappeared. But the edited caption appears correctly. | <br>As in the SAT, the isosurfaces in the PNGJ file have disappeared. But the edited caption appears correctly. | ||
---- | |||
2020-12-17: | |||
<br>3. <scene name='87/870563/Pngj_with_caption_2020-12-16/3'>Scene 1 saved after editing only the CAPTION</scene>, after further fixes by Jaim (2020-12-17). | <br>3. <scene name='87/870563/Pngj_with_caption_2020-12-16/3'>Scene 1 saved after editing only the CAPTION</scene>, after further fixes by Jaim (2020-12-17). | ||
| Line 20: | Line 23: | ||
<br>4. <scene name='87/870563/6zgi_mem-prox_cav_4_colors/1'>New PNGJ with membrane-proximal cavity in 4 colors</scene>. These isosurfaces take several minutes to calculate, but when saved as JVXL files, then loaded from the files and cached, and that saved into a new PNGJ file, the results appear in about one second! | <br>4. <scene name='87/870563/6zgi_mem-prox_cav_4_colors/1'>New PNGJ with membrane-proximal cavity in 4 colors</scene>. These isosurfaces take several minutes to calculate, but when saved as JVXL files, then loaded from the files and cached, and that saved into a new PNGJ file, the results appear in about one second! | ||
---- | |||
2020-12-19: | |||
<br>5. This green link runs a JSmol script, loading the PNGJ file, and writing the caption directly. | <br>5. This green link runs a JSmol script, loading the PNGJ file, and writing the caption directly. | ||
| Line 28: | Line 34: | ||
load "http://proteopedia.org/wiki/images/3/3d/6zgi-membrane-proximal-cavity-jmol-cr2.5.pngj"; | load "http://proteopedia.org/wiki/images/3/3d/6zgi-membrane-proximal-cavity-jmol-cr2.5.pngj"; | ||
spin on; | spin on; | ||
capcmd = "changeCaption(`Four isosurfaces in | capcmd = "changeCaption(`Four isosurfaces in 4 colors from [[6zgi]].`, '', '')" | ||
javascript @capcmd | javascript @capcmd | ||
</script> | </script> | ||
| Line 34: | Line 40: | ||
</jmolLink> | </jmolLink> | ||
</jmol> | </jmol> | ||
I have not been able to devise a method to color text in the caption. Anything with < or > creates an XML error (page cannot be saved). Using e.g. &lt; can be saved, but confuses JSmol which expects a new command after the ';'. | |||
Proteopedia's wiki lacks Template:Font_color: {{font color|red|red text?}}. | |||
6. I tried an indirect method to color caption text. This page saves in Proteopedia, and the JSmol variable captext prints correctly. I can't tell if my assignment to the Javascript variable captext is working. The caption does not display. There are no JSmol errors. There are Javascript warnings, but not errors. | |||
<jmol> | |||
<jmolLink> | |||
<script> | |||
script "http://proteopedia.org/wiki/images/6/69/Colortext.spt" | |||
# captext JSmol variable is only for testing. | |||
captext = "Words with " + colortext("some red", "red") + " in this caption." | |||
javascript captext = "Words with " + colortext("some red", "red") + " in this caption." | |||
capcmd = "changeCaption(captext, '', '')" | |||
javascript @capcmd | |||
</script> | |||
<text>Colored caption test.</text> | |||
</jmolLink> | |||
</jmol> | |||
---- | |||
2020-12-21: | |||
7. <scene name='87/870563/2020_12_21_retry_4_isosurfaces/1'>Re-try of the 4-isosurface PNGJ</scene> (Image:6zgi-membrane-proximal-cavity-jmol-cr2.5.pngj). WORKS. | |||
8. <scene name='87/870563/2020_12_21_retry_4_isosurfaces/2'>Same scene as 7 with caption edited to include colored text</scene>. WORKS WITH COLORED CAPTION. COLORS done with span classes. | |||
9. <scene name='87/870563/2020_12_21_retry_4_isosurfaces/3'>Same as 8 but with yellow caption text done as a style span</scene>. DOES NOT WORK. | |||
10. <scene name='87/870563/2020_12_21_retry_4_isosurfaces/4'>Same as 9 but with non-breaking space codes removed</scene>. STILL DOES NOT WORK. Evidently style spans are not supported in captions. | |||
11. <scene name='87/870563/2020_12_21_retry_4_isosurfaces/5'>Yellow background text changed to a class span</scene>. WORKS. | |||
====PDB (not PNGJ) scenes==== | |||
12. <scene name='87/870563/No_isosurfaces_1d66/2'>A simple scene (no isosurfaces) for testing caption text coloring</scene>. WORKS. FONT COLOR TAGS CAN BE USED IN SCENES NOT INVOLVING PNGJ FILES, BUT BE SURE TO DO BOLD/ITALICS WITH HTML TAGS NOT WIKI MARKUP! | |||
13: <scene name='87/870563/No_isosurfaces_1d66/3'>Test using a color scheme template</scene> for Oxygen. FAILS. | |||
14: <scene name='87/870563/No_isosurfaces_1d66/4'>Single color template method</scene>: <nowiki>{{Font color|red|red text}}</nowiki>. DOES NOT WORK. | |||
15: <scene name='87/870563/No_isosurfaces_1d66/5'>Span style method</scene>. FAILS PREVENTING SCENE OR CAPTION FROM LOADING AT ALL. | |||
</StructureSection> | </StructureSection> | ||
==See Also== | |||
* [[Image:Colortext.spt]] | |||
* [[Proteopedia:DIY:Templates]] | |||
Latest revision as of 01:50, 26 December 2020
PNGJ scene and caption testsPNGJ scene and caption tests
This page created 2020/12/16 after Jaim made changes to enable caption editing.
2020-12-17:
Scenes 4 and 5 use Image:6zgi-membrane-proximal-cavity-jmol-cr2.5.pngj.
2020-12-19:
I have not been able to devise a method to color text in the caption. Anything with < or > creates an XML error (page cannot be saved). Using e.g. < can be saved, but confuses JSmol which expects a new command after the ';'. Proteopedia's wiki lacks Template:Font_color: red text?. 6. I tried an indirect method to color caption text. This page saves in Proteopedia, and the JSmol variable captext prints correctly. I can't tell if my assignment to the Javascript variable captext is working. The caption does not display. There are no JSmol errors. There are Javascript warnings, but not errors.
2020-12-21: 7. (Image:6zgi-membrane-proximal-cavity-jmol-cr2.5.pngj). WORKS. 8. . WORKS WITH COLORED CAPTION. COLORS done with span classes. 9. . DOES NOT WORK. 10. . STILL DOES NOT WORK. Evidently style spans are not supported in captions. 11. . WORKS. PDB (not PNGJ) scenes12. . WORKS. FONT COLOR TAGS CAN BE USED IN SCENES NOT INVOLVING PNGJ FILES, BUT BE SURE TO DO BOLD/ITALICS WITH HTML TAGS NOT WIKI MARKUP! 13: for Oxygen. FAILS. 14: : {{Font color|red|red text}}. DOES NOT WORK. 15: . FAILS PREVENTING SCENE OR CAPTION FROM LOADING AT ALL.
|
| ||||||||||