Structural bioinformatics servers: Difference between revisions
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* [[Biological unit|Biological units: generation of specific oligomers]]<ref name="fgij" /> | * [[Biological unit|Biological units: generation of specific oligomers]]<ref name="fgij" /> | ||
* [[Cation-pi interactions]], identification of<ref name="fgij">Also available within [[FirstGlance in Jmol]] under ''Key Resources''.</ref> | * [[Cation-pi interactions]], identification of<ref name="fgij">Also available within [[FirstGlance in Jmol]] under ''Key Resources''.</ref> | ||
* [[Cavity programs]] | |||
* Clashes, atomic: see ''Quality assessment'' | * Clashes, atomic: see ''Quality assessment'' | ||
* Comparative modeling: see ''Homology Modeling'' | * Comparative modeling: see ''Homology Modeling'' | ||
* [[Conservation, Evolutionary]] notably [[ConSurfDB vs. ConSurf|ConSurf]]<ref name="pp">Also available within Proteopedia, in the blue box under the molecule, on all pages titled with a [[PDB code]].</ref><ref name="fgij" /> | * [[Conservation, Evolutionary]] notably [[ConSurfDB vs. ConSurf|ConSurf]]<ref name="pp">Also available within Proteopedia, in the blue box under the molecule, on all pages titled with a [[PDB code]].</ref><ref name="fgij" /> | ||
* Evolutionary conservation: see ''Conservation, Evolutionary'' | * Evolutionary conservation: see ''Conservation, Evolutionary'' | ||
* [[Site|Functional sites]], identifying | |||
* [[Homology modeling servers]] | * [[Homology modeling servers]] | ||
* [[Improving published models]] e.g. MolProbity and PDB_REDO. | * [[Improving published models]] e.g. MolProbity and PDB_REDO. | ||
* [[Interface analysis servers]] | * [[Interface analysis servers]] | ||
* [[Intrinsically Disordered Protein|Intrinsically disordered regions]], identification of | * [[Intrinsically Disordered Protein|Intrinsically disordered regions]], identification of | ||
* [[Membrane proteins]] | |||
* [[Morphs]], constructing and animating | |||
* [[Quality assessment for molecular models]] | * [[Quality assessment for molecular models]] | ||
* Quaternary structure servers: see ''Biological Unit'' and ''Interface analysis servers'' | * Quaternary structure servers: see ''Biological Unit'' and ''Interface analysis servers'' | ||
* [[Structural genomics]], notably the [http://targetdb.sbkb.org/TargetDB/ Target Database for Structural Biology] | |||
==External | ==External Resources== | ||
* Binding sites detection: [http://probis.cmm.ki.si/ ProBIS Server] | |||
* [http://www.umass.edu/microbio/chime/pe_beta/pe/protexpl/psbiores.htm Protein Structure Bioinformatics Resources], a list from the early 2000's compiled by [[User:Eric Martz]] for [[Protein Explorer]]. | |||
* [http://www.sbkb.org/ Structural Biology Knowledgebase] of PSI|Nature. | |||
==Notes== | ==Notes== | ||
<references /> | <references /> | ||